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Items: 15

1.

PAT-seq: a simple approach to digital gene expression, the measure of poly(A)-tail length and its position in eukaryotic transcriptomes

(Submitter supplied) The Poly(A)-Tail focused RNA-seq, or PAT-seq approach, is an affordable and efficient tool for the measure of 3’UTR dynamics. We show here that PAT-seq returns (i) digital gene expression, (ii) polyadenylation site usage within and between samples, including alternative adenylation, and (iii) the polyadenylation-state the transcriptome. PAT-seq differs from previous 3’ focused RNA-seq methods in that it strictly depends on native 3’ adenylation within total RNA samples and thus removes the need for ribosome depletion and, that the full native poly(A)-tail is included in the sequencing libraries. more...
Organism:
Saccharomyces cerevisiae
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL18085
13 Samples
Download data: CSV
Series
Accession:
GSE53461
ID:
200053461
2.

Illumina HiSeq 1500 (Saccharomyces cerevisiae)

Organism:
Saccharomyces cerevisiae
46 Series
1784 Samples
Download data
Platform
Accession:
GPL18085
ID:
100018085
3.

Wild-type GLU 20min (rep2)

Organism:
Saccharomyces cerevisiae
Source name:
Wild-type GLU 20min
Platform:
GPL18085
Series:
GSE53461
Download data
Sample
Accession:
GSM1294011
ID:
301294011
4.

Wild-type GLU 20min (rep1)

Organism:
Saccharomyces cerevisiae
Source name:
Wild-type GLU 20min
Platform:
GPL18085
Series:
GSE53461
Download data
Sample
Accession:
GSM1294010
ID:
301294010
5.

Wild-type GLU 10min (rep2)

Organism:
Saccharomyces cerevisiae
Source name:
Wild-type GLU 10min
Platform:
GPL18085
Series:
GSE53461
Download data
Sample
Accession:
GSM1294009
ID:
301294009
6.

Wild-type GLU 10min (rep1)

Organism:
Saccharomyces cerevisiae
Source name:
Wild-type GLU 10min
Platform:
GPL18085
Series:
GSE53461
Download data
Sample
Accession:
GSM1294008
ID:
301294008
7.

Wild-type GAL (rep2)

Organism:
Saccharomyces cerevisiae
Source name:
Wild-type GAL
Platform:
GPL18085
Series:
GSE53461
Download data
Sample
Accession:
GSM1294007
ID:
301294007
8.

Wild-type GAL (rep1)

Organism:
Saccharomyces cerevisiae
Source name:
Wild-type GAL
Platform:
GPL18085
Series:
GSE53461
Download data
Sample
Accession:
GSM1294006
ID:
301294006
9.

Wild-type YPEG (rep2)

Organism:
Saccharomyces cerevisiae
Source name:
Wild-type YPEG
Platform:
GPL18085
Series:
GSE53461
Download data
Sample
Accession:
GSM1294005
ID:
301294005
10.

Wild-type YPEG (rep1)

Organism:
Saccharomyces cerevisiae
Source name:
Wild-type YPEG
Platform:
GPL18085
Series:
GSE53461
Download data
Sample
Accession:
GSM1294004
ID:
301294004
11.

Dccr4 cells Log phase (rep3)

Organism:
Saccharomyces cerevisiae
Source name:
Dccr4 cells Log phase
Platform:
GPL18085
Series:
GSE53461
Download data
Sample
Accession:
GSM1294003
ID:
301294003
12.

Dccr4 cells Log phase (rep2)

Organism:
Saccharomyces cerevisiae
Source name:
Dccr4 cells Log phase
Platform:
GPL18085
Series:
GSE53461
Download data
Sample
Accession:
GSM1294002
ID:
301294002
13.

Dccr4 cells Log phase (rep1)

Organism:
Saccharomyces cerevisiae
Source name:
Dccr4 cells Log phase
Platform:
GPL18085
Series:
GSE53461
Download data
Sample
Accession:
GSM1294001
ID:
301294001
14.

Wild-type Log phase (rep2)

Organism:
Saccharomyces cerevisiae
Source name:
Wild-type Log phase
Platform:
GPL18085
Series:
GSE53461
Download data
Sample
Accession:
GSM1294000
ID:
301294000
15.

Wild-type Log phase (rep1)

Organism:
Saccharomyces cerevisiae
Source name:
Wild-type Log phase
Platform:
GPL18085
Series:
GSE53461
Download data
Sample
Accession:
GSM1293999
ID:
301293999
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Supplemental Content

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