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Items: 1 to 20 of 27

1.

Small RNA sequencing of transgenes silencing by paramutation in C. elegans

(Submitter supplied) In the nematode Caenorhabditis elegans, different small RNA-dependent gene silencing mechanisms act in the germline to initiate transgenerational gene silencing. Piwi-interacting RNAs (piRNAs) can initiate transposon and gene silencing by acting upstream of endogenous short interfering RNAs (siRNAs), which engage a nuclear RNA interference (RNAi) pathway to trigger transcriptional gene silencing. Once gene silencing has been established, it can be stably maintained over multiple generations without the requirement of the initial trigger and is also referred to as RNAe or paramutation. more...
Organism:
Caenorhabditis elegans
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL15716 GPL18730
24 Samples
Download data: FA
Series
Accession:
GSE66344
ID:
200066344

SRA Run Selector

2.

Illumina HiSeq 1500 (Caenorhabditis elegans)

Organism:
Caenorhabditis elegans
37 Series
520 Samples
Download data
Platform
Accession:
GPL18730
ID:
100018730

3.

Illumina MiSeq (Caenorhabditis elegans)

Organism:
Caenorhabditis elegans
31 Series
244 Samples
Download data
Platform
Accession:
GPL15716
ID:
100015716

4.

hrde1 +sensor

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1923244
ID:
301923244

SRA Run Selector

5.

rrf-1

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620039
ID:
301620039

SRA Run Selector

6.

5' to 3' spreading, operon silenced via wormcherry

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620038
ID:
301620038

SRA Run Selector

7.

mut-16 trans-silenced

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620037
ID:
301620037

SRA Run Selector

8.

5' to 3' spreading, operon paramutated

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620036
ID:
301620036

SRA Run Selector

9.

5' to 3' spreading, operon trans-silenced

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620035
ID:
301620035

SRA Run Selector

10.

5' to 3' spreading, operon wild type

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620034
ID:
301620034

SRA Run Selector

11.

mcherry H2A unsilenced

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620033
ID:
301620033

SRA Run Selector

12.

drh-3 GFP sensor

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620032
ID:
301620032

SRA Run Selector

13.

hrde-1 HRDE-1RIP

Organism:
Caenorhabditis elegans
Source name:
RNA immunoprecipitation
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620031
ID:
301620031

SRA Run Selector

14.

WT HRDE-1RIP

Organism:
Caenorhabditis elegans
Source name:
RNA immunoprecipitation
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620030
ID:
301620030

SRA Run Selector

15.

operon silenced by RNAi, P0

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620029
ID:
301620029

SRA Run Selector

16.

operon silenced by RNAi, F2

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620028
ID:
301620028

SRA Run Selector

17.

nrde-4 transilencing

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620027
ID:
301620027

SRA Run Selector

18.

nrde-3 trans-silencing

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620026
ID:
301620026

SRA Run Selector

19.

nrde-1 trans-silencing

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620025
ID:
301620025

SRA Run Selector

20.

trans-silenced operon

Organism:
Caenorhabditis elegans
Source name:
Total RNA whole animal
Platform:
GPL15716
Series:
GSE66344
Download data: FA
Sample
Accession:
GSM1620024
ID:
301620024

SRA Run Selector

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db=gds|term=GSE66344[Accession]|query=1|qty=2|blobid=MCID_675c05ef9a32d161162cb778|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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