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Items: 14

1.

Characterization of chromatin accessibility through the DNaseI hypersensitivity assay in breast cancer cells treated with either Dex or E2

(Submitter supplied) The estrogen receptor (ER), glucocorticoid receptor (GR), and forkhead box protein 1 (FoxA1) are significant factors in breast cancer progression. FoxA1 is well-established as a pioneer factor for steroid receptor recruitment to chromatin. Here we show that ER and GR have the ability to alter the genomic response of FoxA1 to specific binding sites within the genome. These findings alter the classical understood mechanism of FoxA1 establishing a dynamic transcription factor that can be regulated by hormones.
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL18573
12 Samples
Download data: BEDGRAPH, CSV
Series
Accession:
GSE72250
ID:
200072250
2.

Illumina NextSeq 500 (Homo sapiens)

Platform
Accession:
GPL18573
ID:
100018573
3.

E2 rep#2 DNase-seq GH1569

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cell line
Platform:
GPL18573
Series:
GSE72250 GSE72252
Download data: BEDGRAPH
Sample
Accession:
GSM1858672
ID:
301858672
4.

E2 rep#1 DNase-seq GH1565

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cell line
Platform:
GPL18573
Series:
GSE72250 GSE72252
Download data: BEDGRAPH
Sample
Accession:
GSM1858671
ID:
301858671
5.

Dex rep#2 DNase-seq GH1568

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cell line
Platform:
GPL18573
Series:
GSE72250 GSE72252
Download data: BEDGRAPH
Sample
Accession:
GSM1858670
ID:
301858670
6.

Dex rep#1 DNase-seq GH1564

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cell line
Platform:
GPL18573
Series:
GSE72250 GSE72252
Download data: BEDGRAPH
Sample
Accession:
GSM1858669
ID:
301858669
7.

untreated rep#2 DNase-seq GH1567

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cell line
Platform:
GPL18573
Series:
GSE72250 GSE72252
Download data: BEDGRAPH
Sample
Accession:
GSM1858668
ID:
301858668
8.

untreated rep#1 DNase-seq GH1563

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cell line
Platform:
GPL18573
Series:
GSE72250 GSE72252
Download data: BEDGRAPH
Sample
Accession:
GSM1858667
ID:
301858667
9.

E2 rep#2 DNase-seq GH1573

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cell line
Platform:
GPL18573
Series:
GSE72250 GSE72252
Download data: BEDGRAPH
Sample
Accession:
GSM1858666
ID:
301858666
10.

E2 rep#1 DNase-seq GH1503

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cell line
Platform:
GPL18573
Series:
GSE72250 GSE72252
Download data: BEDGRAPH
Sample
Accession:
GSM1858665
ID:
301858665
11.

Dex rep#2 DNase-seq GH1572

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cell line
Platform:
GPL18573
Series:
GSE72250 GSE72252
Download data: BEDGRAPH
Sample
Accession:
GSM1858664
ID:
301858664
12.

Dex rep#1 DNase-seq GH1502

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cell line
Platform:
GPL18573
Series:
GSE72250 GSE72252
Download data: BEDGRAPH
Sample
Accession:
GSM1858663
ID:
301858663
13.

untreated rep#2 DNase-seq GH1571

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cell line
Platform:
GPL18573
Series:
GSE72250 GSE72252
Download data: BEDGRAPH
Sample
Accession:
GSM1858662
ID:
301858662
14.

untreated rep#1 DNase-seq GH1501

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cell line
Platform:
GPL18573
Series:
GSE72250 GSE72252
Download data: BEDGRAPH
Sample
Accession:
GSM1858661
ID:
301858661
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Supplemental Content

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