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Items: 13

1.

The binding specificity and regulatory effect of WT and redesigned Puf2p [RNA-Seq]

(Submitter supplied) PUF proteins have become a leading scaffold for designing RNA-binding proteins to contact and control RNAs at will. We analyze the effects of that reengineering across the transcriptome in vivo for the first time. We show, by HITS-CLIP and PAR-CLIP, that S. cerevisiae Puf2p, a non-canonical PUF protein, binds more than 1000 mRNA targets. Puf2p binds multiple UAAU elements, unlike canonical PUF proteins. more...
Organism:
Saccharomyces cerevisiae
Type:
Expression profiling by high throughput sequencing
Platform:
GPL13821
11 Samples
Download data: TXT
Series
Accession:
GSE73227
ID:
200073227
2.

Illumina HiSeq 2000 (Saccharomyces cerevisiae)

Organism:
Saccharomyces cerevisiae
430 Series
6135 Samples
Download data
Platform
Accession:
GPL13821
ID:
100013821
3.

R1 SNE Puf2p RNA-seq 4

Organism:
Saccharomyces cerevisiae
Source name:
BY4742 PUF2 null mutants
Platform:
GPL13821
Series:
GSE73227 GSE73274
Download data: TXT
Sample
Accession:
GSM1888993
ID:
301888993
4.

R1 SNE Puf2p RNA-seq 3

Organism:
Saccharomyces cerevisiae
Source name:
BY4742 PUF2 null mutants
Platform:
GPL13821
Series:
GSE73227 GSE73274
Download data: TXT
Sample
Accession:
GSM1888992
ID:
301888992
5.

R1 SNE Puf2p RNA-seq 2

Organism:
Saccharomyces cerevisiae
Source name:
BY4742 PUF2 null mutants
Platform:
GPL13821
Series:
GSE73227 GSE73274
Download data: TXT
Sample
Accession:
GSM1888991
ID:
301888991
6.

R1 SNE Puf2p RNA-seq 1

Organism:
Saccharomyces cerevisiae
Source name:
BY4742 PUF2 null mutants
Platform:
GPL13821
Series:
GSE73227 GSE73274
Download data: TXT
Sample
Accession:
GSM1888990
ID:
301888990
7.

WT Puf2p RNA-seq 3

Organism:
Saccharomyces cerevisiae
Source name:
BY4742 PUF2 null mutants
Platform:
GPL13821
Series:
GSE73227 GSE73274
Download data: TXT
Sample
Accession:
GSM1888989
ID:
301888989
8.

WT Puf2p RNA-seq 2

Organism:
Saccharomyces cerevisiae
Source name:
BY4742 PUF2 null mutants
Platform:
GPL13821
Series:
GSE73227 GSE73274
Download data: TXT
Sample
Accession:
GSM1888988
ID:
301888988
9.

WT Puf2p RNA-seq 1

Organism:
Saccharomyces cerevisiae
Source name:
BY4742 PUF2 null mutants
Platform:
GPL13821
Series:
GSE73227 GSE73274
Download data: TXT
Sample
Accession:
GSM1888987
ID:
301888987
10.

EV RNA-seq 4

Organism:
Saccharomyces cerevisiae
Source name:
BY4742 PUF2 null mutants
Platform:
GPL13821
Series:
GSE73227 GSE73274
Download data: TXT
Sample
Accession:
GSM1888986
ID:
301888986
11.

EV RNA-seq 3

Organism:
Saccharomyces cerevisiae
Source name:
BY4742 PUF2 null mutants
Platform:
GPL13821
Series:
GSE73227 GSE73274
Download data: TXT
Sample
Accession:
GSM1888985
ID:
301888985
12.

EV RNA-seq 2

Organism:
Saccharomyces cerevisiae
Source name:
BY4742 PUF2 null mutants
Platform:
GPL13821
Series:
GSE73227 GSE73274
Download data: TXT
Sample
Accession:
GSM1888984
ID:
301888984
13.

EV RNA-seq 1

Organism:
Saccharomyces cerevisiae
Source name:
BY4742 PUF2 null mutants
Platform:
GPL13821
Series:
GSE73227 GSE73274
Download data: TXT
Sample
Accession:
GSM1888983
ID:
301888983
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Supplemental Content

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