GEO DataSets

(Submitter supplied) Rice is one of important crop and, the genome has been already completely sequenced. Moreover we collected more than 30K rice FL-cDNA clones as transcriptome resources. However, the cDNA collection did not reveal the transcription activity and specificity of expression. So, we designed 60-mer oligo array based on the array system of Agilent Technologies (GPL477) as custom array. For validation of the array, we tested the reproducibility of labeling and hybridization. more...

Organism:

Oryza sativa; Oryza sativa Japonica Group

Type:

Expression profiling by array

Platforms:

GPL477 GPL892

26 Samples

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(Submitter supplied) On the basis of the collection, mapping and annotation of over 28,000 full-length cDNA clones from japonica rice(Science Jul 18 2003: 376-379), we have constructed a monitoring system that uses the sequence information of the full-length cDNA clones as a 60mer-single stranded oligonucleotide format. Probes on the array (ca 22,000) cover the whole transcription units corresponding to 28K full-length cDNA clones Keywords = Rice Keywords = Plant Keywords = monocotyledons Keywords = full-length cDNA Keywords = 60mer oligonucleotide Keywords = NIAS

Organism:

Oryza sativa

2 DataSets

5 Series

87 Samples

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(Submitter supplied) This array will enable researchers to simultaneously characterize thousands of rice genes associated with biological functions, growth processes, and biotic and abiotic stress response. Probes on this array are designed to selections from the extensive rice (japonica) cDNA library of Japans National Institute of Agrobiological Sciences. Arrays of this design have barcodes that begin with 16012106 or 2512106. more...

Organism:

Oryza sativa Japonica Group

1 DataSet

30 Series

1 Related Platform

216 Samples

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