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Items: 14

1.

The genomic landscape of PUF binding in stem cells

(Submitter supplied) We determined the genomic landscape of FBF-1 and FBF-2 binding in germline stem cells using iCLIP, a method that allows identification of protein-RNA interactions at high resolution. We first developed reagents to explore the genomic binding landscapes of full-length FBF-1 and FBF-2 in vivo and then used our iCLIP data to test the precision of several commonly used methods for CLIP peak calling. Based on this iCLIP data, we discovered that FBF-1 and FBF-2 have similar global protein-RNA interaction profiles and that they both target conserved cell cycle regulators and lincRNAs. more...
Organism:
Caenorhabditis elegans
Type:
Other
Platform:
GPL13657
12 Samples
Download data: TXT
Series
Accession:
GSE76136
ID:
200076136

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2000 (Caenorhabditis elegans)

Organism:
Caenorhabditis elegans
449 Series
4603 Samples
Download data
Platform
Accession:
GPL13657
ID:
100013657

3.

N2 control matched to FBF-2 3

Organism:
Caenorhabditis elegans
Source name:
C. elegans with no FLAG tagged protein
Platform:
GPL13657
Series:
GSE76136
Download data
Sample
Accession:
GSM1974932
ID:
301974932

SRA Run Selector

4.

N2 control matched to FBF-2 2

Organism:
Caenorhabditis elegans
Source name:
C. elegans with no FLAG tagged protein
Platform:
GPL13657
Series:
GSE76136
Download data
Sample
Accession:
GSM1974931
ID:
301974931

SRA Run Selector

5.

N2 control matched to FBF-2 1

Organism:
Caenorhabditis elegans
Source name:
C. elegans with no FLAG tagged protein
Platform:
GPL13657
Series:
GSE76136
Download data
Sample
Accession:
GSM1974930
ID:
301974930

SRA Run Selector

6.

N2 control matched to FBF-1 3

Organism:
Caenorhabditis elegans
Source name:
C. elegans with no FLAG tagged protein
Platform:
GPL13657
Series:
GSE76136
Download data
Sample
Accession:
GSM1974929
ID:
301974929

SRA Run Selector

7.

N2 control matched to FBF-1 2

Organism:
Caenorhabditis elegans
Source name:
C. elegans with no FLAG tagged protein
Platform:
GPL13657
Series:
GSE76136
Download data
Sample
Accession:
GSM1974928
ID:
301974928

SRA Run Selector

8.

N2 control matched to FBF-1 1

Organism:
Caenorhabditis elegans
Source name:
C. elegans with no FLAG tagged protein
Platform:
GPL13657
Series:
GSE76136
Download data
Sample
Accession:
GSM1974927
ID:
301974927

SRA Run Selector

9.

FBF-2 CLIP-seq 3

Organism:
Caenorhabditis elegans
Source name:
C. elegans bearing a 3xFLAG tagged FBF-2 integrated as a single copy
Platform:
GPL13657
Series:
GSE76136
Download data
Sample
Accession:
GSM1974926
ID:
301974926

SRA Run Selector

10.

FBF-2 CLIP-seq 2

Organism:
Caenorhabditis elegans
Source name:
C. elegans bearing a 3xFLAG tagged FBF-2 integrated as a single copy
Platform:
GPL13657
Series:
GSE76136
Download data
Sample
Accession:
GSM1974925
ID:
301974925

SRA Run Selector

11.

FBF-2 CLIP-seq 1

Organism:
Caenorhabditis elegans
Source name:
C. elegans bearing a 3xFLAG tagged FBF-2 integrated as a single copy
Platform:
GPL13657
Series:
GSE76136
Download data
Sample
Accession:
GSM1974924
ID:
301974924

SRA Run Selector

12.

FBF-1 CLIP-seq 3

Organism:
Caenorhabditis elegans
Source name:
C. elegans bearing a 3xFLAG tagged FBF-1 integrated as a single copy
Platform:
GPL13657
Series:
GSE76136
Download data
Sample
Accession:
GSM1974923
ID:
301974923

SRA Run Selector

13.

FBF-1 CLIP-seq 2

Organism:
Caenorhabditis elegans
Source name:
C. elegans bearing a 3xFLAG tagged FBF-1 integrated as a single copy
Platform:
GPL13657
Series:
GSE76136
Download data
Sample
Accession:
GSM1974922
ID:
301974922

SRA Run Selector

14.

FBF-1 CLIP-seq 1

Organism:
Caenorhabditis elegans
Source name:
C. elegans bearing a 3xFLAG tagged FBF-1 integrated as a single copy
Platform:
GPL13657
Series:
GSE76136
Download data
Sample
Accession:
GSM1974921
ID:
301974921

SRA Run Selector

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