GSE76955[Accession] - GEO DataSets - NCBI

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Items: 11

Select item 2000769551.

Genome-wide uniformity of human “open” pre-initiation complexes

(Submitter supplied) Transcription of protein-coding and noncoding DNA occurs pervasively throughout the mammalian genome. Their sites of initiation are generally inferred from transcript 5’ ends, and are thought to be either locally dispersed or focused. How these two modes of initiation relate is unclear. Here, we apply permanganate treatment and chromatin immunoprecipitation (PIP-seq) of initiation factors to identify the precise location of melted DNA separately associated with the pre-initiation complex (PIC) and the adjacent paused complex (PC). more...

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL18573 GPL11154
8 Samples

Download data: BED, BEDGRAPH

Series

Accession:: GSE76955

ID:: 200076955

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000185732.

Illumina NextSeq 500 (Homo sapiens)

Organism:: Homo sapiens

12611 Series
343897 Samples

Platform

Accession:: GPL18573

ID:: 100018573

Select item 1000111543.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10560 Series
183756 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 3020414494.

Organism:: Homo sapiens

Source name:: K562

Platform:: GPL18573
Series:: GSE76955

Download data: BEDGRAPH

Sample

Accession:: GSM2041449

ID:: 302041449

SRA Run Selector

Select item 3020414485.

Organism:: Homo sapiens

Source name:: K562

Platform:: GPL18573
Series:: GSE76955

Download data: BEDGRAPH

Sample

Accession:: GSM2041448

ID:: 302041448

SRA Run Selector

Select item 3020414476.

Organism:: Homo sapiens

Source name:: K562

Platform:: GPL18573
Series:: GSE76955

Download data: BEDGRAPH

Sample

Accession:: GSM2041447

ID:: 302041447

SRA Run Selector

Select item 3020414467.

PolII PIP-seq Rep2

Organism:: Homo sapiens

Source name:: K562

Platform:: GPL11154
Series:: GSE76955

Download data: BEDGRAPH

Sample

Accession:: GSM2041446

ID:: 302041446

SRA Run Selector

Select item 3020414458.

PolII PIP-seq Rep1

Organism:: Homo sapiens

Source name:: K562

Platform:: GPL11154
Series:: GSE76955

Download data: BEDGRAPH

Sample

Accession:: GSM2041445

ID:: 302041445

SRA Run Selector

Select item 3020414449.

TFIIB PIP-seq Rep3

Organism:: Homo sapiens

Source name:: K562

Platform:: GPL11154
Series:: GSE76955

Sample

Accession:: GSM2041444

ID:: 302041444

SRA Run Selector

Select item 30204144310.

TFIIB PIP-seq Rep2

Organism:: Homo sapiens

Source name:: K562

Platform:: GPL11154
Series:: GSE76955

Sample

Accession:: GSM2041443

ID:: 302041443

SRA Run Selector

Select item 30204144211.

TFIIB PIP-seq Rep1

Organism:: Homo sapiens

Source name:: K562

Platform:: GPL11154
Series:: GSE76955

Sample

Accession:: GSM2041442

ID:: 302041442

SRA Run Selector

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