GSE93427[Accession] - GEO DataSets - NCBI

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Items: 12

Select item 2000934271.

Analysis of non-methylated islands, sites of accessible chromatin and nascent transcriptome in C127 mouse cell line. [C127_BioCAP-ATAC-4sU]

(Submitter supplied) Chromatin modifications and the promoter associated epigenome are thought to be important for the regulation of gene expression. However, the mechanisms by which chromatin modifying complexes are targeted to the appropriate gene promoters in vertebrates and how they influence gene expression have remained poorly defined. Here, using a combination of live cell imaging and functional genomics, we discover that the vertebrate SET1 complex is targeted to actively transcribed target gene promoters through CFP1 which engages in a unique form of multivalent chromatin reading that involves recognition of non-methylated DNA and histone H3 lysine 4 trimethylation (H3K4me3). more...

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing; Other

Platforms:: GPL19057 GPL13112
9 Samples

Download data: BED, BW

Series

Accession:: GSE93427

ID:: 200093427

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000190572.

Illumina NextSeq 500 (Mus musculus)

Organism:: Mus musculus

10521 Series
299959 Samples

Platform

Accession:: GPL19057

ID:: 100019057

Select item 1000131123.

Illumina HiSeq 2000 (Mus musculus)

Organism:: Mus musculus

8394 Series
189339 Samples

Platform

Accession:: GPL13112

ID:: 100013112

Select item 3024532224.

C127_RNAseq rep3

Organism:: Mus musculus

Source name:: Mouse mammary epithelial cell line

Platform:: GPL19057
Series:: GSE93427 GSE93538

Sample

Accession:: GSM2453222

ID:: 302453222

SRA Run Selector

Select item 3024532215.

C127_RNAseq rep2

Organism:: Mus musculus

Source name:: Mouse mammary epithelial cell line

Platform:: GPL19057
Series:: GSE93427 GSE93538

Sample

Accession:: GSM2453221

ID:: 302453221

SRA Run Selector

Select item 3024532206.

C127_RNAseq rep1

Organism:: Mus musculus

Source name:: Mouse mammary epithelial cell line

Platform:: GPL19057
Series:: GSE93427 GSE93538

Sample

Accession:: GSM2453220

ID:: 302453220

SRA Run Selector

Select item 3024532197.

Organism:: Mus musculus

Source name:: Mouse mammary epithelial cell line

Platform:: GPL19057
Series:: GSE93427 GSE93538

Sample

Accession:: GSM2453219

ID:: 302453219

SRA Run Selector

Select item 3024532188.

Organism:: Mus musculus

Source name:: Mouse mammary epithelial cell line

Platform:: GPL19057
Series:: GSE93427 GSE93538

Sample

Accession:: GSM2453218

ID:: 302453218

SRA Run Selector

Select item 3024532179.

Organism:: Mus musculus

Source name:: Mouse mammary epithelial cell line

Platform:: GPL19057
Series:: GSE93427 GSE93538

Sample

Accession:: GSM2453217

ID:: 302453217

SRA Run Selector

Select item 30245321610.

C127_ATAC input

Organism:: Mus musculus

Source name:: Mouse mammary epithelial cell line

Platform:: GPL19057
Series:: GSE93427 GSE93538

Sample

Accession:: GSM2453216

ID:: 302453216

SRA Run Selector

Select item 30245321511.

Organism:: Mus musculus

Source name:: Mouse mammary epithelial cell line

Platform:: GPL13112
Series:: GSE93427 GSE93538

Sample

Accession:: GSM2453215

ID:: 302453215

SRA Run Selector

Select item 30245321412.

Organism:: Mus musculus

Source name:: Mouse mammary epithelial cell line

Platform:: GPL13112
Series:: GSE93427 GSE93538

Sample

Accession:: GSM2453214

ID:: 302453214

SRA Run Selector

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