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1.

Loss of the Caenorhabditis elegans pocket protein LIN-35 reveals MuvB’s innate function as the repressor of DREAM target genes

(Submitter supplied) The Retinoblastoma-like pocket proteins p130 and p107 act as gatekeepers of the cell cycle through their activity within the DREAM (Dp/Rb-like/E2F/MuvB) transcriptional repressor complex. The goal of this study was to address how the pocket protein contributes to DREAM complex assembly and function on chromatin by utilizing a protein null mutant of the only C. elegans pocket protein LIN-35. We performed ChIP-seq of C. more...
Organism:
Caenorhabditis elegans
Type:
Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis
Platforms:
GPL22765 GPL13657 GPL9269
46 Samples
Download data: BW, NARROWPEAK
Series
Accession:
GSE95071
ID:
200095071
2.

Illumina HiSeq 4000 (Caenorhabditis elegans)

Organism:
Caenorhabditis elegans
338 Series
2033 Samples
Download data
Platform
Accession:
GPL22765
ID:
100022765
3.

Illumina HiSeq 2000 (Caenorhabditis elegans)

Organism:
Caenorhabditis elegans
450 Series
4615 Samples
Download data
Platform
Accession:
GPL13657
ID:
100013657
4.

Illumina Genome Analyzer II (Caenorhabditis elegans)

Organism:
Caenorhabditis elegans
92 Series
458 Samples
Download data
Platform
Accession:
GPL9269
ID:
100009269
5.

Input for ChIP-seq, wildtype extract rep 2b

Organism:
Caenorhabditis elegans
Source name:
Input for ChIP-seq, wildtype extract
Platform:
GPL9269
Series:
GSE95071
Download data
Sample
Accession:
GSM2495731
ID:
302495731
6.

Input for ChIP-seq, wildtype extract rep 1b

Organism:
Caenorhabditis elegans
Source name:
Input for ChIP-seq, wildtype extract
Platform:
GPL9269
Series:
GSE95071
Download data
Sample
Accession:
GSM2495729
ID:
302495729
7.

Input for ChIP-seq, wildtype extract rep 1a

Organism:
Caenorhabditis elegans
Source name:
Input for ChIP-seq, wildtype extract
Platform:
GPL9269
Series:
GSE95071
Download data
Sample
Accession:
GSM2495728
ID:
302495728
8.

LIN-54 ChIP-seq in wild-type late embryos, rep 1a

Organism:
Caenorhabditis elegans
Source name:
LIN-54 ChIP-seq in wild-type late embryos
Platform:
GPL9269
Series:
GSE95071
Download data
Sample
Accession:
GSM2495722
ID:
302495722
9.

LIN-52 ChIP-seq in wild-type late embryos, rep 2b

Organism:
Caenorhabditis elegans
Source name:
LIN-52 ChIP-seq in wild-type late embryos
Platform:
GPL9269
Series:
GSE95071
Download data
Sample
Accession:
GSM2495717
ID:
302495717
10.

LIN-52 ChIP-seq in wild-type late embryos, rep 1b

Organism:
Caenorhabditis elegans
Source name:
LIN-52 ChIP-seq in wild-type late embryos
Platform:
GPL9269
Series:
GSE95071
Download data
Sample
Accession:
GSM2495716
ID:
302495716
11.

LIN-9 ChIP-seq in wild-type late embryos, rep 1a

Organism:
Caenorhabditis elegans
Source name:
LIN-9 ChIP-seq in wild-type late embryos
Platform:
GPL9269
Series:
GSE95071
Download data
Sample
Accession:
GSM2495706
ID:
302495706
12.

LIN-35 ChIP-seq in wild-type late embryos, rep 1a

Organism:
Caenorhabditis elegans
Source name:
LIN-35 ChIP-seq in wild-type late embryos
Platform:
GPL9269
Series:
GSE95071
Download data
Sample
Accession:
GSM2495702
ID:
302495702
13.

EFL-1 ChIP-seq in wild-type late embryos, rep 2b

Organism:
Caenorhabditis elegans
Source name:
EFL-1 ChIP-seq in wild-type late embryos
Platform:
GPL9269
Series:
GSE95071
Download data
Sample
Accession:
GSM2495697
ID:
302495697
14.

EFL-1 ChIP-seq in wild-type late embryos, rep 1b

Organism:
Caenorhabditis elegans
Source name:
EFL-1 ChIP-seq in wild-type late embryos
Platform:
GPL9269
Series:
GSE95071
Download data
Sample
Accession:
GSM2495696
ID:
302495696
15.

DPL-1 ChIP-seq in wild-type late embryos, rep 1b

Organism:
Caenorhabditis elegans
Source name:
DPL-1 ChIP-seq in wild-type late embryos
Platform:
GPL9269
Series:
GSE95071
Download data
Sample
Accession:
GSM2495690
ID:
302495690
16.

Input for ChIP-seq, lin-35(n745) extract rep 2

Organism:
Caenorhabditis elegans
Source name:
Input for ChIP-seq, lin-35(n745) extract
Platform:
GPL13657
Series:
GSE95071
Download data
Sample
Accession:
GSM2495734
ID:
302495734
17.

Input for ChIP-seq, lin-35(n745) extract rep 1

Organism:
Caenorhabditis elegans
Source name:
Input for ChIP-seq, lin-35(n745) extract
Platform:
GPL13657
Series:
GSE95071
Download data
Sample
Accession:
GSM2495733
ID:
302495733
18.

Input for ChIP-seq, wildtype extract rep 2a

Organism:
Caenorhabditis elegans
Source name:
Input for ChIP-seq, wildtype extract
Platform:
GPL13657
Series:
GSE95071
Download data
Sample
Accession:
GSM2495730
ID:
302495730
19.

LIN-54 ChIP-seq in lin-35(n745) late embryos, rep 2

Organism:
Caenorhabditis elegans
Source name:
LIN-54 ChIP-seq in lin-35(n745) late embryos
Platform:
GPL13657
Series:
GSE95071
Download data
Sample
Accession:
GSM2495726
ID:
302495726
20.

LIN-54 ChIP-seq in lin-35(n745) late embryos, rep 1

Organism:
Caenorhabditis elegans
Source name:
LIN-54 ChIP-seq in lin-35(n745) late embryos
Platform:
GPL13657
Series:
GSE95071
Download data
Sample
Accession:
GSM2495725
ID:
302495725
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