GEO DataSets

(Submitter supplied) Pattern discovery algorithms are methods for discovering recurrent, non-random motifs widely used in the analysis of biological sequences. Many algorithms exist but few comparisons have been made amongst them. We systematically profile eight representative methods at multiple parameter settings across 174 diverse experimental datasets, including ten novel ChIP-on-chip datasets. We executed 16,777 pattern discovery analyses to assess prediction accuracy, CPU usage and memory consumption. more...

Organism:

Homo sapiens

Type:

Genome binding/occupancy profiling by genome tiling array

Platform:

GPL2040

23 Samples

Download data: GPR

(Submitter supplied) This array contains single-spotted clones representing 12,192 CpG-island clones from the Sanger Institute. The CpG Library was originally prepared by Sally Cross in the laboratory of Adrian Bird at The Wellcome Trust Centre for Cell Biology (University of Edinburgh). For information on the preparation of the original library, please see Cross, S.H., et.al., Purification of CpG islands using a methylated DNA binding column. more...

Organism:

Homo sapiens

15 Series

423 Samples

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