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Items: 3

1.

Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA

(Submitter supplied) The spatial and temporal regulation of transcription initiation is pivotal for controlling gene expression. Here, we introduce capped-small RNA-seq (csRNA-seq), which uses total RNA as starting material to detect transcription start sites (TSS) of both stable and unstable RNAs at single-nucleotide resolution. csRNA-seq is highly sensitive to acute changes in transcription and identifies an order of magnitude more regulated transcripts than RNA-seq. more...
Organism:
Nematostella vectensis; Neurospora crassa; Capsaspora owczarzaki; Oryza sativa; Homo sapiens; Mus musculus
Type:
Other
10 related Platforms
40 Samples
Download data: BIGWIG, BW, TXT
Series
Accession:
GSE135498
ID:
200135498
2.

Illumina NextSeq 500 (Homo sapiens)

Platform
Accession:
GPL18573
ID:
100018573
3.

K562 csRNAinput r1

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL18573
Series:
GSE135498
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Sample
Accession:
GSM4012723
ID:
304012723
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db=gds|term=GSM4012723[Accession]|query=1|qty=7|blobid=MCID_677d303b0bdf8a6e733149ab|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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