GEO DataSets

(Submitter supplied) Copy Number Variations (CNVs) were identified performing Comparative Genomic Hybridization (CGH) on 225 patients after whole-genome amplification, using Agilent SurePrint G3 4x180K microarrays. CNVs were further integrated with gene expression (Affymetrix U133+2 arrays) and mutations (targeted DNA resequencing). Complete description of the methods, array quality checks and called segments are available as supplemental material in the corresponding publication.

Organism:

Homo sapiens

Type:

Genome binding/occupancy profiling by genome tiling array

Platform:

GPL27429

225 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Homo sapiens

Type:

Expression profiling by array; Genome binding/occupancy profiling by genome tiling array

Platforms:

GPL27429 GPL570

448 Samples

Download data: CEL, TXT

(Submitter supplied) Platform annotation updated by cghRA 1.6.0 through BLAT remapping against the GRCh37 assembly. WACA biases are also provided for wave artifact removal. Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:

Homo sapiens

2 Series

225 Samples

Download data