GSM474221[Accession] - GEO DataSets

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Items: 4

Select item 2000191701.

Conservation genomics of Atlantic salmon

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Osmerus mordax; Coregonus clupeaformis; Oncorhynchus tshawytscha; Oncorhynchus mykiss; Salmo salar

Type:: Expression profiling by array

Platform:: GPL2716
54 Samples

Download data: MEV

Series

Accession:: GSE19170

ID:: 200019170

Analyze with GEO2R

Select item 2000191192.

Conservation genomics of Atlantic salmon (Year Two)

(Submitter supplied) Due to difficulties inherent in designating conservation units for effective species management and conservation, the use of multiple complementary sources of information is required to identify and assess the designation of conservation units based on the degree of variation among populations within a species. In this study, we combined estimates of microsatellite and transcriptomic variation to assess the population structure and potential for adaptive variation of threatened Atlantic salmon, Salmo salar, among rivers in the Bay of Fundy. more...

Organism:: Osmerus mordax; Oncorhynchus mykiss; Oncorhynchus tshawytscha; Salmo salar; Coregonus clupeaformis

Type:: Expression profiling by array

Platform:: GPL2716
34 Samples

Download data: MEV

Series

Accession:: GSE19119

ID:: 200019119

Analyze with GEO2R

Select item 1000027163.

GRASP 16K version 2

(Submitter supplied) The microarrays have a 4-by-12 metagrid layout with 19 X19 spot subgrid, each spot having an approximate diameter and pitch of 100 um and 0.20 mm, respectively. A 280 bp GFP (green fluorescent protein) cDNA was amplified from a GFP clone (Clontech) using the primers (5'-GAAACATTCTTGGACACAAATTGG-3') and (5'-GCAGCTGTTACAAACTCAAGAAGG-3') and printed in each subgrid corner to assist in gridding. Six exogenous genome (Arabidopsis) cDNAs were amplified from the following clones kindly provided by The Arabidopsis Information Resource: rubisco activase [GenBank:T41667], protochlorophyllide reductase precursor [GenBank:R30630], chlorophyll a/b-binding protein CP29 [GenBank:N65746], PSII oxygen-evolving complex protein 2 [GenBank:H36167], tonoplast intrinsic protein root-specific RB7 [GenBank:AA067532] and ferredoxin (2Fe_2S) precursor [GenBank:W43249] and spotted in quadruplicate on each microarray. more...