GSM521662[Accession] - GEO DataSets

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Items: 3

Select item 2000208571.

Development of the Restriction Site Tiling Analysis (RSTA) method: Accurate discovery and quantitative genotyping of genome-wide polymorphisms using nucleotide arrays

(Submitter supplied) Here we developed a new high-throughput polymorphism detection and genotyping method based on identifying restriction cut site polymorphisms using a microarray platform. We compared the genomes of 20 individual urchins; 10 from the northern part of the species range (Boiler Bay, OR) and 10 from the southern part of the range (San Diego, CA).

Organism:: Strongylocentrotus purpuratus

Type:: Genome variation profiling by array

Platform:: GPL10171
20 Samples

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Accession:: GSE20857

ID:: 200020857

Analyze with GEO2R

Select item 1000101712.

Agilent-015554 RSTA Purple sea urchin 244K v.2.0

(Submitter supplied) in situ oligonucleotide synthesis on glass slide platform; 50bp oligo sequences based on custom designed probes to be centered on all Taq1-alpha restriction cut sites (TCGA) in the purple urchin genome