GSM546332[Accession] - GEO DataSets

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Items: 3

Select item 2000219721.

Mock or KSHV cells (BJABJ, BCBL, TIME and HUVEC) vs common reference (mixture of RNA from both infected and uninfected cells)

(Submitter supplied) Expression profiling of latently infected cells using a custom tiling microarray HUVEC and TIME cells were infected BCBL-1-derived KSHV. Mock infected HUVEC and TIME cells served as controls for each of these two stably infected cells, respectively. BJAB cells served as uninfected controls for the BCBL-1 cells. KSHV-infected cells are induced to enter lytic cycle with valproate or Adenovirus-RTA. Cells were harvested at indicated time points and analyzed.

Organism:: Homo sapiens; Human herpesvirus 8 type M

Type:: Expression profiling by genome tiling array

Platform:: GPL10083
20 Samples

Download data: TXT

Series

Accession:: GSE21972

ID:: 200021972

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000100832.

KSHV tiling microarray AMADID: 017577

(Submitter supplied) Probes based on KSHV (U75698.1) and Homo sapiens for select human transcripts. Protocol: Standard Agilent printing methods. 60-mer tiling oligonucleotides. Offset = 20nts from both strands of the KSHV genome (U75698.1). Platform contains both KSHV and human probes, all of which are used in the LOWESS normalization protocol Platform contains standard Agilent controls probes, including probes that detect spike-in control transcripts.

Organism:: Homo sapiens; Human herpesvirus 8 type M

4 Series
35 Samples

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Platform

Accession:: GPL10083

ID:: 100010083

Select item 3005463323.

TIME +KSHV/AdRTA, 54 h.p.i. replicate 1 (P-type strain study)

Organism:: Homo sapiens

Source name:: TIME +KSHV/AdRTA, 54 h.p.i. replicate 1 (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, SLK, HFF, HUVEC, TIME), both infected and uninfected. (channel 2)