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Items: 3

1.

Detection of Ψ in RNA oligonucleotides and in tRNAs from S. cerevisiae strains by reverse transcription using RT-KTq I614Y

(Submitter supplied) We have engineered an RT-active DNA polymerase variant called RT-KTq I614Y that produces error RT‑signatures specific for pseudouridine (Ψ) without prior chemical treatment of the RNA samples. These signatures are amplified during DNA amplicon library preparation and are detected by NGS. This method was applied to distinguish U from Ψ in RNA oligonucleotides (modified or unmodified) used in the previous polymerase screening and oligonucleotides which are designed from the human 18S rRNA at the position around 1445. more...
Organism:
Saccharomyces cerevisiae; synthetic construct
Type:
Other
Platforms:
GPL32628 GPL31112
14 Samples
Download data: FASTA, XLSX
Series
Accession:
GSE217198
ID:
200217198
2.

NextSeq 2000 (synthetic construct)

Organism:
synthetic construct
12 Series
116 Samples
Download data
Platform
Accession:
GPL32628
ID:
100032628
3.

unmodified RNA oligo used in screening - RT-KTq I614Y - 2µMdATP

Organism:
synthetic construct
Source name:
chemically synthesized oligo
Platform:
GPL32628
Series:
GSE217198
Download data: XLSX
Sample
Accession:
GSM6706486
ID:
306706486
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