GEO DataSets

(Submitter supplied) Isogenic UPF1+ or upf1- yeast strains were treated with 10 ug/ml thiolutin to inhibit global transcription. Targets were obtained from 16 time points: 0, 2, 4, 6, 8, 10, 12, 15, 20, 25, 30, 35, 40, 45, 50, 60 minutes after transcription inhibition. Three biological replicates of each were generated and the expression profiles were determined using Affymetrix YG-S98 arrays. Comparisons between the sample groups allow the identification of genes with differential expression over time between UPF1+ and upf1-. more...

Organism:

Saccharomyces cerevisiae

Type:

Expression profiling by array

Dataset:

GDS1611

Platform:

GPL90

96 Samples

Download data: CEL, CHP, EXP

Analysis of wild type and mutant upf1 strains up to 60 minutes after treatment with 10 ug/ml thiolutin, a global transcription inhibitor. Upf1 is an RNA helicase required for nonsense-mediated mRNA decay (NMD). Results identify genes with differential expression over time between the two strains.

Organism:

Saccharomyces cerevisiae

Type:

Expression profiling by array, transformed count, 2 genotype/variation, 16 time sets

Platform:

GPL90

Series:

GSE3076

96 Samples

Download data: CEL, CHP, EXP

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 08, 2012: annotation table updated with netaffx build 32 : annotation table updated with netaffx build July 01, 2016: annotation table updated with netaffx build 35 Protocol: see manufacturer's web site Has 9335 entries and was indexed 29-Jan-2002. more...

Organism:

Saccharomyces cerevisiae

52 DataSets

166 Series

2445 Samples

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