GSM690936[Accession] - GEO DataSets

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Items: 4

Select item 2000280151.

Identification of Tumor Suppressors and Oncogenes from Genomic and Epigenetic Features in Ovarian Cancer

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by array; Methylation profiling by genome tiling array; Genome variation profiling by genome tiling array

Platforms:: GPL96 GPL13248 GPL8581
139 Samples

Download data: CEL, FTR, GPR, TXT

Series

Accession:: GSE28015

ID:: 200028015

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000279402.

Methylation detection Oligonucleotide Microarray Analysis: high resolution method for CpG island methylation detection 3.

(Submitter supplied) The identification of genetic and epigenetic alterations from primary tumor cells has become a common method to identify genes critical to the development and progression of cancer. We provide a bioinformatic analysis of copy number variation and DNA methylation covering the genetic landscape of ovarian cancer tumor cells. We individually examined the copy number variation and DNA methylation for 44 primary ovarian cancer samples and 7 ovarian normal samples using our MOMA-ROMA technology and Affymetrix expression data as well as 379 tumor samples analyzed by The Cancer Genome Atlas. more...

Organism:: Homo sapiens

Type:: Methylation profiling by genome tiling array

Platform:: GPL13248
51 Samples

Download data: FTR, TXT

Series

Accession:: GSE27940

ID:: 200027940

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000132483.

CSHL-Human-MOMA3, 368K CpG tiling array

(Submitter supplied) Human Genome Build 36 (hg18) Protocol: Our approach to map genome-wide methylation involves tiling all the predicted CpG islands. All annotated CpG islands were obtained from the UCSC genome browser. These islands were predicted using the published Gardiner-Garden and Frommer (1) definition and involves the following criteria: length >= 200bp, %GC >= 50%, observed/expected CpG >= 0.6. There are ~26219 CpG islands in the range of 200bp to 2000bp in the genome. more...