GSM877175[Accession] - GEO DataSets

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Items: 4

Select item 2000358961.

Gene expression data from 62 colorectal cancers

(Submitter supplied) We stratified colorectal tumor samples using a new unsupervised, iterative method based on non-negative matrix factorization (NMF). The resulting five subtypes exhibited activation of specific signaling pathways, and significant differences in microsatellite status and tumor location. We could also align three CRC cell lines panels to these subtypes.

Organism:: Homo sapiens

Type:: Expression profiling by array

Dataset:: GDS4379
Platform:: GPL570
62 Samples

Download data: CEL

Series

Accession:: GSE35896

ID:: 200035896

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 43792.

Colorectal cancer tumors

Analysis of primary colorectal cancer (CRC) tumors. CRC is a heterogeneous disease. Results provide insight into stratifying CRC tumor samples into subtypes and tailoring treatments for the CRC subtypes.

Organism:: Homo sapiens

Type:: Expression profiling by array, transformed count, 6 disease state, 3 genotype/variation, 5 other sets

Platform:: GPL570
Series:: GSE35896
62 Samples

Download data: CEL

DataSet

Accession:: GDS4379

ID:: 4379

PubMed Full text in PMC Similar studies GEO Profiles Analyze DataSet

Select item 1000005703.

[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 06, 2012: annotation table updated with netaffx build 32 June 23, 2016: annotation table updated with netaffx build 35 Protocol: see manufacturer's web site Complete coverage of the Human Genome U133 Set plus 6,500 additional genes for analysis of over 47,000 transcripts All probe sets represented on the GeneChip Human Genome U133 Set are identically replicated on the GeneChip Human Genome U133 Plus 2.0 Array. more...