GEO DataSets

(Submitter supplied) The heterogeneity of bacterial cells in biofilms is an important property. We performed single-cell sequencing to profile heterogeneous cell populations within Vibrio alginolyticus biofilm. Our analysis has revealed the key functional compartments for the composition and development of biofilms

Organism:

Vibrio alginolyticus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32345

1 Sample

Download data: MTX, TSV

(Submitter supplied) To explore the mechanism underlying the phenotypic and genetic changes in the variants of SCSIO 43097, we conducted an RNA-seq analysis of the wild-type strain and the variants.

Organism:

Vibrio alginolyticus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32345

6 Samples

Download data: XLS

(Submitter supplied) RNA-seq analysis demonstrated that VqsA (18672) controls ~275 genes' expression in V. alginolyticus. Collectively, our data established that VqsA plays essential roles in QS regulation and may facilitate the illumination of the mechanisms bacterial cells sense environmental signals and integrate them into coordinated QS responses.

Organism:

Vibrio alginolyticus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26112

2 Samples

Download data: TXT

(Submitter supplied) Vibrio alginolyticus is a Gram-negative marine bacterium. A limited population of the organisms causes acute gastroenteritis in humans. In this study, Vibrio alginolyticus wild type strain EPGS is compared with the mutants of Ser-Thr kinase PpkA and phosphatase PppA, after cultured for 7h, in Luria-Bertani containing medium 3 % NaCl at 30 C. Our goal is to determine the ppkA and pppA regulon.

Organism:

Vibrio alginolyticus; Vibrio parahaemolyticus RIMD 2210633

Type:

Expression profiling by array

Platform:

GPL10965

8 Samples

Download data: CALLS, PAIR