Similar studies for GEO DataSets (Select 200002394) - GEO DataSets

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Items: 18

Select item 2000023941.

Neuromuscular Junction

(Submitter supplied) NMJ Junction various time points normal C57BL10 LCM mRNA Keywords: other

Organism:: Mus musculus

Type:: Expression profiling by array

Dataset:: GDS1352
Platform:: GPL81
4 Samples

Download data: CEL

Series

Accession:: GSE2394

ID:: 200002394

Select item 13522.

Neuromuscular junction

Analysis of the neuromuscular junction (NMJ), a regionally specialized area of myofibers. NMJ regions isolated using laser capture microdissection. Results provide insight into the formation and maintenance of the NMJ.

Organism:: Mus musculus

Type:: Expression profiling by array, count, 2 other sets

Platform:: GPL81
Series:: GSE2394
4 Samples

Download data: CEL

DataSet

Accession:: GDS1352

ID:: 1352

Select item 2000157373.

Fiber and NMJ / synaptic gene expression comparisons in rat extraocular muscle (EOM) and tibialis anterior (TA) muscle.

(Submitter supplied) Purpose: To examine and characterize the expression profile of genes expressed at the neuromuscular junctions (NMJs) of extraocular muscles (EOMs) in comparison to the NMJs of tibialis anterior muscle (TA). Methods: Adult rat rectus EOMs and TAs were dissected, flash-frozen, serially sectioned and stained for acetylcholinesterase to identify NMJs. Approximately 6000 NMJs for EOM (EOMsyn) and 6000 NMJs for TA (TAsyn) and equal amounts of NMJ-free fiber regions (EOMfib, TAfib) and underlying myonuclei were captured using laser capture microdissection (LCM). more...

Organism:: Rattus norvegicus

Type:: Expression profiling by array

Platform:: GPL1355
16 Samples

Download data: CEL, CHP

Series

Accession:: GSE15737

ID:: 200015737

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000084254.

Laser microdissection and microarray analysis of the hippocampus of Rasgrf1 knockout mice

(Submitter supplied) We used manual macrodissection or laser capture microdissection (LCM) to isolate tissue sections of the hippocampus area of Ras-GRF1 wild type and knockout mice brains, and analyzed their transcriptional patterns using commercial oligonucleotide microarrays. Comparison between the transcriptomes of macrodissected and microdissected samples showed that the LCM samples allowed detection of significantly higher numbers of differentially expressed genes, with higher statistical rates of significance. more...

Organism:: Mus musculus

Type:: Expression profiling by array

Dataset:: GDS2816
Platform:: GPL339
6 Samples

Download data: CEL, CHP

Series

Accession:: GSE8425

ID:: 200008425

Select item 28165.

Ras-GRF1 deficiency effect on the hippocampus

Analysis of laser capture microdissected hippocampi of mutants lacking Ras-GRF1. Ras-GRF-1 is a guanine nucleotide exchange factor predominantly expressed in the central nervous system of mammals. Results provide insight into role of Ras-GRF1 in neural processes.

Organism:: Mus musculus

Type:: Expression profiling by array, count, 2 genotype/variation sets

Platform:: GPL339
Series:: GSE8425
6 Samples

Download data: CEL, CHP

DataSet

Accession:: GDS2816

ID:: 2816

Select item 2000038936.

Gene Expression Profiling of matched Ductal Carcinomas in Situ and Invasive Breast Tumors

(Submitter supplied) This is a matched-pair analysis of ductal carcinoma in situ (DCIS) and invasive component (IDC) of nine breast ductal carcinoma to identify novel molecular markers characterizing the transition from DCIS to IDC for a better understanding of its molecular biology. Keywords: Affymetrix-based Microarrays in Mamma carcinoma

Organism:: Homo sapiens

Type:: Expression profiling by array

Datasets:: GDS2045 GDS2046
Platforms:: GPL570 GPL96
24 Samples

Download data

Series

Accession:: GSE3893

ID:: 200003893

Select item 20467.

Ductal carcinoma in situ to invasive ductal carcinoma progression (HG-U133 2.0)

Analysis of preinvasive ductal carcinoma in situ (DCIS) and invasive ductal carcinoma (IDC) tumors. Pairs of patient-matched DCIS and IDC tumor specimens analyzed. Results provide insight into the mechanisms underlying the progression of DCIS to IDC.

Organism:: Homo sapiens

Type:: Expression profiling by array, transformed count, 2 disease state, 7 individual sets

Platform:: GPL570
Series:: GSE3893
14 Samples

Download data

DataSet

Accession:: GDS2046

ID:: 2046

Select item 20458.

Ductal carcinoma in situ to invasive ductal carcinoma progression (HG-U133A)

Organism:: Homo sapiens

Type:: Expression profiling by array, transformed count, 2 disease state, 5 individual sets

Platform:: GPL96
Series:: GSE3893
10 Samples

Download data

DataSet

Accession:: GDS2045

ID:: 2045

Select item 2000214199.

Laser Capture Microdissection of Hyperlipidemic Mouse Aorta Atherosclerosis

(Submitter supplied) Atherosclerosis is a transmural chronic inflammatory condition of small and large arteries that is associated with adaptive immune responses at all disease stages. However, impacts of adaptive immune reactions on clinically apparent atherosclerosis such as intima lesion (plaque) rupture, thrombosis, myocardial infarction, and aneurysm largely remain to be identified. It is increasingly recognized that leukocyte infiltrates in plaque, media, and adventitia are distinct but their specific roles have not been defined. more...

Organism:: Mus musculus

Type:: Expression profiling by array

Platform:: GPL8321
19 Samples

Download data: CEL

Series

Accession:: GSE21419

ID:: 200021419

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000137410.

Laminar gene expression of rat extraocular orbital and global layers

(Submitter supplied) Adult rat global and orbital layers of rectal extraocular muscles microdissected using Arcturus Pixcell II LCM are gene profiled here using affymetrix rat RAE230A gene chip. www.med.upenn.edu/cellbio/faculty/rubinstein/ www.uphs.upenn.edu/pmi/members/khurana/lab%20page.htm Keywords: ordered

Organism:: Rattus norvegicus

Type:: Expression profiling by array

Dataset:: GDS851
Platform:: GPL341
8 Samples

Download data

Series

Accession:: GSE1374

ID:: 200001374

Select item 85111.

Extraocular muscle: comparison of global and orbital layers

Expression profiling of microdissected global and orbital layers of the rectus extraocular muscle (EOM) from 2 adult Sprague-Dawleys. By identifying molecular differences between the 2 layers, results provide insight into the possible specialized function of each muscle layer.

Organism:: Rattus norvegicus

Type:: Expression profiling by array, count, 2 tissue sets

Platform:: GPL341
Series:: GSE1374
8 Samples

Download data

DataSet

Accession:: GDS851

ID:: 851

Select item 20000047112.

Expression profiling of extraocular muscles

(Submitter supplied) The extraocular muscles (EOM) are anatomically and physiologically distinct from other skeletal muscles. EOM are preferentially affected in mitochondrial myopathies, but spared in Duchenne's muscular dystrophy. The anatomical and pathophysiological properties of EOM have been attributed to their unique molecular makeup: an allotype. We used expression profiling to define molecular features of the EOM allotype. more...

Organism:: Rattus norvegicus

Type:: Expression profiling by array

Dataset:: GDS254
Platform:: GPL85
16 Samples

Download data: CEL

Series

Accession:: GSE471

ID:: 200000471

Select item 25413.

Muscle, normal extraocular, profile

Molecular definition of extraocular muscles (EOM). EOM are anatomically and physiologically distinct from other skeletal muscles.

Organism:: Rattus norvegicus

Type:: Expression profiling by array, count, 2 tissue sets

Platform:: GPL85
Series:: GSE471
16 Samples

Download data: CEL

DataSet

Accession:: GDS254

ID:: 254

Select item 20009240014.

Exon array data from neuromuscular junction (NMJ) in mouse skeletal muscle.

(Submitter supplied) The RNA from NMJ and non-NMJs samples were examined using microarray analysis with of identifying novel regulatory genes that are preferentially expressed in the synaptic regions of the isolated muscle fibers.

Organism:: Mus musculus

Type:: Expression profiling by array

Platform:: GPL6096
6 Samples

Download data: CEL, CHP

Series

Accession:: GSE92400

ID:: 200092400

Select item 20002148715.

Melampsora larici-populina gene expression in different tissues of uredinia

(Submitter supplied) Laser Capture Microdissection (LCM) was used for expression analysis of three contrasted fungal tissues of uredinia corresponding respectively to spores and sporogenous hyphae, fungal structures in the spongy mesophyll and fungal infection structures in the palisade mesophyll. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, Department of Energy) Melampsora larici-populina genome sequence version 1. more...

Organism:: Melampsora laricis-populina

Type:: Expression profiling by array

Platform:: GPL10350
9 Samples

Download data: PAIR

Series

Accession:: GSE21487

ID:: 200021487

Select item 20014712716.

Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers

(Submitter supplied) While the majority of cells contain a single nucleus, cell types such as trophoblasts, osteoclasts, and skeletal myofibers require multinucleation. One advantage of multinucleation can be the assignment of distinct functions to different nuclei, but comprehensive interrogation of transcriptional heterogeneity within multinucleated tissues has been challenging due to the presence of a shared cytoplasm. more...

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24247
6 Samples

Download data: H5

Series

Accession:: GSE147127

ID:: 200147127

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20012003017.

Stochastic profiling of matrix-attached MCF10A-5E cells in 3D culture

(Submitter supplied) The objective of this study was to profile the gene-regulatory heterogeneities of breast epithelial cells grown in an ECM-rich environment. The approach was to use stochastic profiling (Janes et al., Nat Methods 7(4):311-7 [2010]) to collect 10-cell pools of ECM-attached cells obtained by laser-capture microdissection and measure fluctuations in the 10-cell-averaged measurements to infer heterogeneous regulatory states.

Organism:: Homo sapiens

Type:: Expression profiling by array

Platform:: GPL6255
32 Samples

Download data: TXT

Series

Accession:: GSE120030

ID:: 200120030

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20024401418.

Spatial transcriptomics in embryonic mouse diaphragm muscle reveals regional gradients and subdomains of developmental gene expression

(Submitter supplied) Embryonic mouse diaphragm is a primary model for studying myogenesis and neuro-muscular synaptogenesis, both of which represent processes regulated by spatially organized genetic programs of myonuclei located in distinct myodomains. However, a spatial gene expression pattern of embryonic mouse diaphragm has not been reported. Here we provide spatially resolved gene expression data for horizontally sectioned embryonic mouse diaphragms at E14.5 and E18.5. more...