Similar studies for GEO DataSets (Select 200018290) - GEO DataSets

Select item 2000182901.

Time course expression data from early Bovine embryo, Human embryo, and Mouse embryo

(Submitter supplied) The process of early development of mammals is subtly and accurately controlled by the regulation networks of embryo cells. Time course expression data measured at different stages during early embryo development process can give us valuable information by revealing the dynamic expression patterns of genes in genome wide scale. In this study, bovine embryo expression data were generated at oocyte, one cell stage, two cell stage, four cell stage, eight cell stage, sixteen cell stage, morula, and blastocyst; Human embryo expression data were generated at one cell stage, two cell stage, four cell stage, eight cell stage, morula, and blastocyst; Mouse embryo expression data were generated at one cell stage, two cell stage, four cell stage, eight cell stage, morula, and blastocyst. more...

Organism:: Homo sapiens; Bos taurus; Mus musculus

Type:: Expression profiling by array

Datasets:: GDS3958 GDS3959 GDS3960
Platforms:: GPL2112 GPL570 GPL339
52 Samples

Download data: CEL

Series

Accession:: GSE18290

ID:: 200018290

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000183192.

Gene expression signatures for mESC treated by RNAi strategy on down regulation of gene Mtf2

(Submitter supplied) To further explore the function of Mtf2, the homolog of Drosophila Polycomb group gene PCL, we have employed the mouse whole genome microarray expression profiling as a discovery platform to identify genes mediated by Mtf2. Oligos of 2 different RNAi target sites on gene Mtf2 were cloned into RNAi Vector pSuper and transfected individually into Mouse Embryonic Stem Cell line E14. Empty Vector pSuper and plasmid containing RNAi target against gene Luciferase (Firefly) were performed in the same way as negative controls. more...

Organism:: Mus musculus

Type:: Expression profiling by array

Platform:: GPL4134
4 Samples

Download data: GPR

Series

Accession:: GSE18319

ID:: 200018319

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 39603.

Preimplantation embryonic development (Bovine)

Analysis of embryos at different stages of preimplantation embryonic development (PED): oocyte, one-cell, two-cell, four-cell, eight-cell, 16-cell, morula, and blastocyst. The progression of PED is highly conserved among mammals. Results provide insight into molecular mechanisms underlying PED.

Organism:: Bos taurus

Type:: Expression profiling by array, count, 8 development stage sets

Platform:: GPL2112
Series:: GSE18290
16 Samples

Download data: CEL

DataSet

Accession:: GDS3960

ID:: 3960

PubMed Full text in PMC Similar studies GEO Profiles Analyze DataSet

Select item 39594.

Preimplantation embryonic development (HG-U133_Plus_2)

Analysis of embryos at different stages of preimplantation embryonic development (PED): one-cell, two-cell, four-cell, eight-cell, morula, and blastocyst. The progression of PED is highly conserved among mammals. Results provide insight into molecular mechanisms underlying PED.

Organism:: Homo sapiens

Type:: Expression profiling by array, count, 6 development stage sets

Platform:: GPL570
Series:: GSE18290
18 Samples

Download data: CEL

DataSet

Accession:: GDS3959

ID:: 3959

PubMed Full text in PMC Similar studies GEO Profiles Analyze DataSet

Select item 39585.

Preimplantation embryonic development (MOE430A)

Analysis of embryos at different stages of preimplantation embryonic development (PED): one-cell, two-cell, four-cell, eight-cell, morula, and blastocyst. The progression of PED is highly conserved among mammals. Results provide insight into molecular mechanisms underlying PED.

Organism:: Mus musculus

Type:: Expression profiling by array, count, 6 development stage sets

Platform:: GPL339
Series:: GSE18290
18 Samples

Download data: CEL

DataSet

Accession:: GDS3958

ID:: 3958

PubMed Full text in PMC Similar studies GEO Profiles Analyze DataSet

Select item 2000799356.

The landscape of accessible chromatin in mammalian pre-implantation embryos (ChIP -Seq)

(Submitter supplied) In mammals, extensive chromatin reorganization is essential for reprogramming terminally committed gametes to a totipotent state during preimplantation development. However, the global chromatin landscape and its dynamics in this period remain unexplored. Here we report a genome-wide map of accessible chromatin in mouse preimplantation embryos using an improved assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) approach with CRISPR/Cas9-assisted mitochondrial DNA depletion. more...

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL18480
2 Samples

Download data: BEDGRAPH

Series

Accession:: GSE79935

ID:: 200079935

PubMed Similar studies SRA Run Selector

Select item 2000665827.

The landscape of accessible chromatin in mammalian pre-implantation embryos (RNA-Seq)

(Submitter supplied) In mammals, extensive chromatin reorganization is essential for reprogramming terminally committed gametes to a totipotent state during preimplantation development. However, the global chromatin landscape and its dynamics in this period remain unexplored. Here we report a genome-wide map of accessible chromatin in mouse preimplantation embryos using an improved assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) approach with CRISPR/Cas9-assisted mitochondrial DNA depletion. more...

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL18480
32 Samples

Download data: TXT

Series

Accession:: GSE66582

ID:: 200066582

PubMed Similar studies SRA Run Selector

Select item 2000665818.

The landscape of accessible chromatin in mammalian pre-implantation embryos (ATAC-Seq)

(Submitter supplied) In mammals, extensive chromatin reorganization is essential for reprogramming terminally committed gametes to a totipotent state during preimplantation development. However, the global chromatin landscape and its dynamics in this period remain unexplored. Here we report a genome-wide map of accessible chromatin in mouse preimplantation embryos using an improved assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) approach with CRISPR/Cas9-assisted mitochondrial DNA depletion. more...

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL18480
17 Samples

Download data: BEDGRAPH

Series

Accession:: GSE66581

ID:: 200066581

PubMed Similar studies SRA Run Selector

Select item 2000663909.

The landscape of accessible chromatin in mammalian pre-implantation embryos

(Submitter supplied) In mammals, extensive chromatin reorganization is essential for reprogramming terminally committed gametes to a totipotent state during preimplantation development. However, the global chromatin landscape and its dynamics in this period remain unexplored. Here we report a genome-wide map of accessible chromatin in mouse preimplantation embryos using an improved assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) approach with CRISPR/Cas9-assisted mitochondrial DNA depletion. more...

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL18480
51 Samples

Download data: BEDGRAPH

Series

Accession:: GSE66390

ID:: 200066390

PubMed Similar studies

Select item 20007463610.

Genome-wide maps of five major transcription factors in epiblast stem cells

(Submitter supplied) ChIP-seq data of ZIC2, OTX2, SOX2, POU5F1 and POU3F1 in EpiSCs

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL17021
11 Samples

Download data: BED, BW

Series

Accession:: GSE74636

ID:: 200074636

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20006917311.

Preimplantation stage-specific effect of culture environment on the DNA methylome of bovine blastocysts

(Submitter supplied) The culture conditions of the early preimplantation embryos affects the DNA methylation landscape of the resulting blastocysts.

Organism:: Bos taurus

Type:: Methylation profiling by genome tiling array

Platform:: GPL18384
16 Samples

Download data: TXT

Series

Accession:: GSE69173

ID:: 200069173

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20011199012.

Gene expression analysis of in vivo originated bovine embryos fllushed out at 2- or 8-cell stages and cultured in vitro till blastocyst stage

(Submitter supplied) There is an inevitable need for combining in vitro and in vivo culture systems during specific developmental time points to facilitate a comprehensive understanding of early embryo development which would yield insights into the molecular pathways controlling early development and to improve our knowledge in regulation of embryonic development. In current study, we aimed to understand the influences of in vitro culture conditions on bovine blastocyst originated in vivo at 2- or 8-cell stagre. more...