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Links from GEO DataSets

Items: 9

1.

Identification of a Novel Bacteriocin Regulatory System in Streptococcus mutans

(Submitter supplied) Recently, we described the function of a novel two-gene regulatory system consisting of a LytTR family transcription regulator and a membrane protein, which we referred to as the hdrRM operon. We determined that the HdrRM system controls the expression of another similar regulatory system annotated as SMU.2080 and SMU.2081. Like hdrRM, the SMU.2080 – 2081 operon encodes a LytTR family transcription regulator and membrane protein, which we now refer to as BrsR and BrsM, respectively. more...
Organism:
Streptococcus mutans
Type:
Expression profiling by array
Platform:
GPL4769
2 Samples
Download data: CEL
Series
Accession:
GSE22902
ID:
200022902
2.

Characterization of the trehalose utilization operon in Streptococcus mutans reveals that the TreR transcriptional regulator is involved in stress response pathways and toxin production

(Submitter supplied) Streptococcus mutans, the organism most frequently associated with the development of dental caries, is able to utilize a diverse array of carbohydrates for energy metabolism. One such molecule is trehalose, a disaccharide common in human foods, which has recently been implicated in enhancing the virulence of epidemic strains of the pathogen, Clostridium difficile. In this study, deletion mutants of all three genes in the putative S. more...
Organism:
Streptococcus mutans
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24591
18 Samples
Download data: TXT, XLSX
Series
Accession:
GSE110275
ID:
200110275
3.

A dedicated three component regulatory system (GSP/Ghk/Grr) activates gallocin transcription in Streptococcus gallolyticus UCN34

(Submitter supplied) Bacteriocins are natural antimicrobial peptides produced by a bacterium to kill closely related competitors. Streptococcus gallolyticus subsp. gallolyticus (Sgg) UCN34 produces a two-component bacteriocin named gallocin to colonize the gut by killing resident enterococci. In the present work, we investigated how gallocin was regulated by deleting individually three genes present in the locus and encoding potentially an inducing peptide (gsp), a histidine kinase (ghk) and a LytTR-containing response regulator (grr). more...
Organism:
Streptococcus gallolyticus UCN34
Type:
Expression profiling by high throughput sequencing
Platform:
GPL28370
12 Samples
Download data: TXT
Series
Accession:
GSE148401
ID:
200148401
4.

Transcriptional response of Streptococcus mutans in chemically defined medium (CDM) towards the autoinducers CSP and XIP

(Submitter supplied) S. mutans UA159 was cultivated in chemically defined medium. Changes in the transcriptome in response to the autoinducing peptides CSP and XIP were monitored for 30 minutes.
Organism:
Streptococcus mutans UA159
Type:
Expression profiling by high throughput sequencing
Platform:
GPL19789
20 Samples
Download data: TXT
Series
Accession:
GSE65982
ID:
200065982
5.

Gene expression of Streptococcus mutans pknB mutant versus wild type strain

(Submitter supplied) Bacteria can detect, transmit and react to signals from the outside world by using two-component systems an serine-threonine kinases and phosphatases. Streptococcus mutans contains one serine-threonine kinase, encoded by pknB. A gene encoding a serine-threonine phosphatase, pppL, is located downstream of pknB. In this study, the phenotypes of single mutants in pknB and pppL and a pknBpppL double mutant were characterized. more...
Organism:
Streptococcus mutans UA159
Type:
Expression profiling by array
Platform:
GPL9332
3 Samples
Download data: TXT
Series
Accession:
GSE18355
ID:
200018355
6.

Regulation of PTSBio by transcriptional repressor NigR

(Submitter supplied) In this study we analyzed the transcriptional regulation of the operon (OBio) encoding the PTSBio and showed that it was repressed by NigR, a LacI-like transcriptional regulator. To elucidate the role of NigR in regulation of S. mutans carbohydrate transporters we performed full genome expression microarrays using custom Affymetrix chip. Expression microarray analysis was performed with ΔnigR grown in CDM supplemented with glucose and compared to that of WT grown under identical conditions. more...
Organism:
Streptococcus mutans UA159; Streptococcus mutans
Type:
Expression profiling by array
Platform:
GPL4769
4 Samples
Download data: CEL, CHP
Series
Accession:
GSE63213
ID:
200063213
7.

Peptide alarmone signalling triggers an auto-active bacteriocin necessary for genetic competence

(Submitter supplied) The induction of genetic competence is a strategy used by bacteria to increase their genetic repertoire under stressful environmental conditions. Recently, Streptococcus pneumoniae has been shown to co-ordinate the uptake of transforming DNA with fratricide via increased expression of the peptide pheromone responsible for competence induction. Here, we document that environmental stress-induced expression of the peptide pheromone competence-stimulating peptide (CSP) in the oral pathogen Streptococcus mutans. more...
Organism:
Streptococcus mutans UA159; Streptococcus mutans
Type:
Expression profiling by array
Platform:
GPL5911
6 Samples
Download data: MEV
Series
Accession:
GSE22019
ID:
200022019
8.

Streptococcus mutans UA159 vs. fabT mutant strain, pH5 vs. pH7

(Submitter supplied) Transcriptional analysis of the regulator FabT in S. mutans
Organism:
Streptococcus mutans; Streptococcus mutans UA159
Type:
Expression profiling by array
Platform:
GPL4339
16 Samples
Download data: MEV
Series
Accession:
GSE36960
ID:
200036960
9.

Activation of TnSmu1, an integrative and conjugative element, is lethal to Streptococcus mutans

(Submitter supplied) RNA-seq was utilized to compare the transcriptomes of a CRISPRi control strain and a CRISPRi strain targeting/repressing SMU_218
Organism:
Streptococcus mutans
Type:
Expression profiling by high throughput sequencing
Platform:
GPL21130
6 Samples
Download data: TXT
Series
Accession:
GSE202804
ID:
200202804
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Supplemental Content

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