GEO DataSets

(Submitter supplied) We analyzed allele-specific expression (ASE) in leaf and floral tissues of F1 interspecific hybrids generated between the two closely related species of Arabidopsis thaliana and Arabidopsis lyrata with a whole-genome SNP tiling array (AtSNPtile1).

Organism:

Arabidopsis thaliana x Arabidopsis lyrata; Arabidopsis thaliana; Arabidopsis lyrata

Type:

Expression profiling by SNP array; Genome variation profiling by SNP array

Platform:

GPL13483

24 Samples

Download data: CEL

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Arabidopsis thaliana; Arabidopsis lyrata

Type:

Expression profiling by genome tiling array; Expression profiling by high throughput sequencing

Platforms:

GPL11022 GPL10977

7 Samples

Download data: BED, CEL

(Submitter supplied) A major effort is underway to study the natural variation within the model plant species, Arabidopsis thaliana. Much of this effort is focused on genome resequencing, however the translation of genotype to phenotype will be largely effected through variations within the transcriptomes at the sequence and expression levels. To examine the cross-talk between natural variation in genomes and transcriptomes, we have examined the transcriptomes of three divergent A. more...

Organism:

Arabidopsis thaliana

Type:

Expression profiling by genome tiling array

Platform:

GPL10977

3 Samples

Download data: CEL, TXT

(Submitter supplied) Transposable elements (TEs) are often the primary determinant of genome size differences among eukaryotes. In plants, the proliferation of TEs is countered through epigenetic silencing mechanisms that prevent transposition. Recent studies using the model plant Arabidopsis thaliana have revealed that methylated TE insertions are often associated with reduced expression of nearby genes, and these insertions may be subject to purifying selection due to their effect on nearby genes. more...

Organism:

Arabidopsis lyrata

Type:

Expression profiling by high throughput sequencing

Platform:

GPL11022

4 Samples

Download data: BED

(Submitter supplied) Here we present the first whole-genome assemblies of Arabidopsis thaliana strains since the release of the 125 Mb reference genome sequence a decade ago. We demonstrate their practical relevance in studying the expression differences of polymorphic genes and show how the analysis of sRNA sequencing data can lead to erroneous conclusions if aligned against the reference genome alone.

Organism:

Arabidopsis thaliana

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL9302

8 Samples

Download data: FASTQ, TXT

(Submitter supplied) a2e_heterosis - h3k4me2_col_chr4 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in Col

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array

Platform:

GPL10772

8 Samples

Download data: GPR

(Submitter supplied) a2e_heterosis - h3k4me2_colxc24_chr4 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in ColxC24 hybrids

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array

Platform:

GPL10772

8 Samples

Download data: GPR

(Submitter supplied) a2e_heterosis - h3k27me3_col(c24) - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in Col

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array

Platforms:

GPL10920 GPL10919

8 Samples

Download data: PAIR

(Submitter supplied) a2e_heterosis - h3k27me3_c24 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in C24

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array

Platforms:

GPL10919 GPL10920

7 Samples

Download data: PAIR

(Submitter supplied) a2e_heterosis - h3k27me3_colxc24 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in ColxC24 hybrids

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array

Platforms:

GPL10920 GPL10919

8 Samples

Download data: PAIR

(Submitter supplied) a2e_heterosis - h3k4me2_col(cvi) - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in Col-0

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array

Platforms:

GPL10919 GPL10920

8 Samples

Download data: PAIR

(Submitter supplied) a2e_heterosis - h3k4me2_cvi - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in Cvi

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array

Platforms:

GPL10920 GPL10919

8 Samples

Download data: PAIR

(Submitter supplied) a2e_heterosis - h3k4me2_colxcvi - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in ColxCvi hybrids

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array

Platforms:

GPL10920 GPL10919

8 Samples

Download data: PAIR

(Submitter supplied) a2e_heterosis - h3k27me3_col(cvi) - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in Col

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array

Platforms:

GPL10920 GPL10919

7 Samples

Download data: PAIR

(Submitter supplied) a2e_heterosis - h3k27me3_cvi - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in Cvi seedlings

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array

Platforms:

GPL10919 GPL10920

8 Samples

Download data: PAIR

(Submitter supplied) a2e_heterosis - h3k27me3_colxcvi - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K27me3 profiling in ColxCvi hybrids

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array

Platforms:

GPL10920 GPL10919

8 Samples

Download data: PAIR

(Submitter supplied) a2e_heterosis - h3k4me2_c24_chr4 - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - H3K4me2 profiling in C24

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array

Platform:

GPL10772

8 Samples

Download data: GPR

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array

Platforms:

GPL10920 GPL10919 GPL10772

104 Samples

Download data: GPR, PAIR

(Submitter supplied) a2e_heterosis - cgh_colvscvi_wg - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - Comparative genome hybridization between Arabidopsis thaliana accessions Col-0 and CVi.

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array

Platforms:

GPL10919 GPL10920

4 Samples

Download data: PAIR

(Submitter supplied) a2e_heterosis - cgh_colvsc24_wg - Arabidopsis thaliana accessions (Col-0, C24 and Cvi) and their hybrid were used to investigate the dynamics of the epigenome after intraspecific hybridization between - Comparative genome hybridization between Arabidopsis thaliana accessions Col-0 and C24.

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by genome tiling array

Platforms:

GPL10920 GPL10919

2 Samples

Download data: PAIR