GEO DataSets

(Submitter supplied) In this study, we design and apply a DNA expression array for Aspergillus nidulans in combination with legacy data to form a comprehensive gene expression compendium. We apply a guilt-by-association-based analysis to predict the extent of the biosynthetic clusters for the 58 synthases active in our set of experimental conditions. A comparison with legacy data shows the method to be accurate in 13 out of 16 known clusters and nearly accurate for the remaining three. more...

Organism:

Aspergillus nidulans FGSC A4; Aspergillus nidulans

Type:

Expression profiling by array

Platform:

GPL15913

8 Samples

Download data: TXT

(Submitter supplied) The cell wall is a structure involved in important stages of fungal growth and morphogenesis. Several studies in the literature have shown how perturbations at the cell wall-level trigger dramatic effects on growth (e.g. Horiuchi, 2009). Despite the importance of fungal cell walls and despite the great advances made in the field, there are still missing pieces in our understanding of cell wall dynamics in filamentous fungi. more...

Organism:

Aspergillus nidulans

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22359

6 Samples

Download data: TXT

(Submitter supplied) Expression profiles of wild-type and mcrA-deleted cells cultured in a glucose minimal medium for 1 day.

Organism:

Aspergillus nidulans

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22359

6 Samples

Download data: TXT

(Submitter supplied) Aspergillus nidulans is a model organism for aspergilli, an important group of filamentous fungi that encompasses human and plant pathogens, as well as industrial cell factories. Aspergilli have a highly diversified metabolism and both in connection with their biotechnological application as well as their interaction with other cells (humans or plants), it is valuable to understand how their metabolism is regulated. more...

Organism:

Aspergillus nidulans

Type:

Expression profiling by array

Dataset:

GDS2313

Platform:

GPL3604

9 Samples

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Analysis of Aspergillus nidulans cultures grown in glucose, ethanol, or glycerol. A. nidulans is a model organism for aspergilli, which include biotechnologically useful strains as well as human and plant pathogens. Results provide insight into the regulation of metabolism in A. nidulans.

Organism:

Aspergillus nidulans

Type:

Expression profiling by array, count, 3 growth protocol sets

Platform:

GPL3604

Series:

GSE4578

9 Samples

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(Submitter supplied) Using genetic engineering tools available for the model organism Aspergillus nidulans, we constructed two recombinant strains; one expressing the model polyketide Penicillium griseofulvum 6-methylsalicylic acid (6-MSA) polyketide synthase gene, and one expressing the 6-MSA gene and overexpressing the native phosphoketolase (phk) for increasing the pool of polyketide precursor levels. The physiology of the recombinant strains and a reference wild type were characterized on glucose, xylose, glycerol and ethanol medium in controlled bioreactors. more...

Organism:

Aspergillus niger; Aspergillus nidulans; Aspergillus oryzae

Type:

Expression profiling by array

Platform:

GPL5975

23 Samples

Download data: CEL