Similar studies for GEO DataSets (Select 200042381) - GEO DataSets

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Items: 2

Select item 2000423811.

Integrated omics studies delineate the formation and dynamics of lipid droplets in Rhodococcus opacus PD630 for biofuel feedstock

(Submitter supplied) Purpose: To delineate mechanisms underlying lipid storage in LDs, we compared the transcriptomes of cells cultivated under three lipid-accumulating conditions. Methods: PD630 mRNA profiles of 3 different conditions (normal condition and LDs acculation conditions) were generated by deep sequencing, using Solid platform. The sequence reads were mapped by using Bowtie followed by Cufflinks. Results: Most genes were either expressed under all three conditions (6,759 genes) or under at least one condition (7,770 genes), but 1,177 genes were not expressed under any of these conditions. more...

Organism:: Rhodococcus opacus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL16295
3 Samples

Download data: DIFF, GTF

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Accession:: GSE42381

ID:: 200042381

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000390232.

Global transcriptional profiling of oleaginous yeast Rhodosporidium toruloides under nitrogen limitation.

(Submitter supplied) Nitrogen limitation is a major regulator to initiate lipid overproduction in oleaginous fungi. To examine the influence of nitrogen starvation, chemiostat cultures of R. toruloides in defined media with abundant ammonium (MM) or minute ammonium (MM-N) were performed to obtain steady-state samples. Then Illumina's digital gene expression (DGE) technology was used for high-throughput transcriptome profiling of these samples.