GEO DataSets

(Submitter supplied) Cichlids fishes exhibit extensive phenotypic diversification and speciation. In this study we integrate transcriptomic and proteomic signatures from two cichlids species, identify novel open reading frames (nORFs) and perform evolutionary analysis on these nORF regions. We embark comparative transrcriptomics and proteogenomic analysis of two metabolically active tissues, the testes and liver, of two cichlid species Oreochromis niloticus (Nile tilapia, ON) and Pundamilia nyererei (Makobe Island, PN). more...

Organism:

Pundamilia nyererei; Oreochromis niloticus

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL23067 GPL28548

6 Samples

Download data: TXT

(Submitter supplied) Whole-genome methylomes and total transcriptomes for muscle and liver tissues of Lake Malawi cichlid species characterised in the context of phenotypic diversification.

Organism:

Diplotaxodon limnothrissa; Maylandia zebra; Rhamphochromis longiceps; Astatotilapia calliptera; Pundamilia nyererei; Petrotilapia genalutea; Aulonocara stuartgranti

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

11 related Platforms

60 Samples

Download data: BW, FA, TXT

(Submitter supplied) Metriaclima estherae, Protomelas similis, Rhamphochromis "chilingali", and Astatotilapia tweddlei genomic DNA hybridized with Astatotilapia burtoni genomic DNA

Organism:

Haplochromis burtoni; Rhamphochromis sp. 'chilingali'; Protomelas similis; Haplochromis tweddlei; Maylandia estherae

Type:

Genome variation profiling by array

Platform:

GPL6416

8 Samples

Download data: GPR

(Submitter supplied) We sought to evaluate the brain gene expression profiles of male courtship display. To assess male display and courtship behavior, we designed a courtship preference assay. We evaluated social interactions between males and females using a 40 gallon tank design with a ‘rock’ habitat at one end and ‘sand’ at the other, separated by glass bottom. When parental rock species (Petrotilapia nigra (TaxId 526958), Maylandia zebra (TaxId 106582), Labeotropheus feulliborni) are placed in this tank paradigm, males court females over the rocks. more...

Organism:

Petrotilapia nigra x Aulonocara baenschi; Maylandia zebra x Tramitichromis intermedius; Maylandia zebra x Mchenga conophoros; Petrotilapia nigra x Mchenga conophoros; Labeotropheus fuelleborni x Mchenga conophoros

Type:

Expression profiling by high throughput sequencing

5 related Platforms

10 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Mchenga conophoros

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32577

23 Samples

Download data: CSV, MTX, TAR, TSV

(Submitter supplied) Social behaviors are essential for survival and reproduction and vary strongly among individuals, species, and heritable brain diseases. The molecular and cellular bases of this variation are poorly resolved, and discovering them is necessary to understand how neural circuit and behavioral functions—and dysfunctions—vary in social contexts. Here we integrate single nucleus RNA-sequencing (snRNA-seq) with comparative genomics and automated behavior analysis to investigate the neurobiology of castle-building, a recently-evolved social, spatial, goal-directed, and repetitive construction behavior in Lake Malawi cichlid fishes. more...

Organism:

Mchenga conophoros

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32577

13 Samples

Download data: MTX, TAR, TSV

(Submitter supplied) Social behaviors are essential for survival and reproduction and vary strongly among individuals, species, and heritable brain diseases. The molecular and cellular bases of this variation are poorly resolved, and discovering them is necessary to understand how neural circuit and behavioral functions—and dysfunctions—vary in social contexts. Here we integrate single nucleus RNA-sequencing (snRNA-seq) with comparative genomics and automated behavior analysis to investigate the neurobiology of castle-building, a recently-evolved social, spatial, goal-directed, and repetitive construction behavior in Lake Malawi cichlid fishes. more...

Organism:

Mchenga conophoros

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32577

10 Samples

Download data: CSV, MTX, TSV