GEO DataSets

(Submitter supplied) The proteins of the White Collar 1 family (WC) constitute a major class of flavin photoreceptors, widely distributed in fungi, that work in cooperation with a WC 2 protein forming a regulatory complex. The WC complex was investigated in great detail in Neurospora crassa, a model fungus in photobiology studies, where it controls all its major photoresponses. The fungus Fusarium fujikuroi, a model system in the production of secondary metabolites, contains a single WC-1 gene called wcoA. more...

Organism:

Fusarium fujikuroi

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24816

24 Samples

Download data: TSV

(Submitter supplied) This RNA-seq data set investigates the function of the DASH cryptochrome CryD in the fungus Fusarium fujikuroi, and are an extension of the former study on the role of the WcoA photoreceptor (GEO Series GSE159533) (Pardo-Medina J, Gutiérrez G, Limón MC, Avalos J (2021) Impact of the White Collar photoreceptor WcoA on the Fusarium fujikuroi transcriptome. Front Microbiol 11:1–17. https://doi.org/10.3389/fmicb.2020.619474)). more...

Organism:

Fusarium fujikuroi

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24816

12 Samples

Download data: TSV

(Submitter supplied) In the fungi Fusarium fujikuroi and Fusarium oxysporum, the induction of carotenogenesis by light and its deregulation in carS mutants, affected in a protein of the RING-finger family, are achieved on transcription of the structural genes of the pathway, some of them organized in a cluster. We have carried out global RNAseq transcriptomics analyses to investigate the relationship between the regulatory effects of light and the carS mutation. more...

Organism:

Fusarium fujikuroi; Fusarium oxysporum f. sp. lycopersici

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL24303 GPL24306

20 Samples

Download data: TSV

(Submitter supplied) Carotenoid biosynthesis in the fungus Fusarium fujikuroi is regulated by environmental factors, with light as the main stimulating signal. The CarS RING finger protein plays an important role downregulating the structural genes of the carotenoid pathway. A recent transcriptomic analysis on the effect of carS mutation identified a gene for a lncRNA upstream of carS, called carP, whose deletion results in increased levels of carS mRNA and lack of carotenoid production. more...

Organism:

Fusarium fujikuroi

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24816

12 Samples

Download data: TSV

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Fusarium oxysporum f. sp. lycopersici; Fusarium fujikuroi

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL24816 GPL22633 GPL34083

14 Samples

Download data

(Submitter supplied) RNA interference (RNAi) mechanisms play key regulatory roles in many biological systems, and components of the RNAi pathway are conserved in a wide range of eukaryotic genomes, including those of filamentous fungi. The biotechnological fungus Fusarium fujikuroi, widely used in secondary metabolism studies, contains the complete set of genes expected for RNAi pathways, including dcl1 and dcl2 dicer genes. more...

Organism:

Fusarium fujikuroi; Fusarium oxysporum f. sp. lycopersici

Type:

Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL34083 GPL22633

8 Samples

Download data: CSV

(Submitter supplied) Diatoms, albeit being only distantly related with higher plants, harbour a plant-like cryptochrome (CryP) that was proposed to act as a photoreceptor required for the regulation of photosynthetic proteins. Importantly, plant cryptochromes are assumed to be involved in the regulation of developmental processes that are only needed in multicellular organisms; their role in the unicellular diatoms to date is mostly enigmatic. more...

Organism:

Phaeodactylum tricornutum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17128

15 Samples

Download data: XLS

(Submitter supplied) We performed genome-wide transcriptome analyses of the Fusarium fujikuroi wild type compared to the ∆lae1 and OE:lae1 mutants under nitrogen limiting and nitrogen sufficient conditions Lae1 was shown to be a master regulator of secondary metabolite gene clusters in F. fujikuroi. Deletion of the gene resulted in down-regulation, while overexpression resulted in up-regulation of several gene clusters, partially even under otherwise repressing conditions.

Organism:

Fusarium fujikuroi

Type:

Expression profiling by array

Platform:

GPL21751

12 Samples

Download data: XYS

(Submitter supplied) The phytopathogenic fungus Fusarium fujikuroi is the causal agent of bakanae disease on rice due to its ability to produce gibberellins. Besides these phytohormones, F. fujikuroi is able to produce a wide range of other secondary metabolites (SMs), such as mycotoxins and pigments. Although much progress has been made in the field of secondary metabolism over the last years, the transcriptional regulation of SM biosynthetic genes is complex and far from being fully understood. more...

Organism:

Fusarium fujikuroi

Type:

Expression profiling by array

Platform:

GPL16547

8 Samples

Download data: PAIR, XYS

(Submitter supplied) We performed genome-wide transcriptome analyses of the Fusarium fujikuroi wild type (WT) in comparison to deletion mutants of the histone methyltransferase genes SET2 and ASH1 The results show that the two methyltransferases control large sets of genes involved in primary and secondary metabolism due to the modifications of the chromatin structure (methylation of histone 3 lysine 36)

Organism:

Fusarium fujikuroi

Type:

Expression profiling by array

Platform:

GPL22756

12 Samples

Download data: TXT

(Submitter supplied) We performed genome-wide transcriptome analyses of the Fusarium fujikuroi wild type compared to the ∆nsd1 mutant Nsd1 is a GATA type transcription factor which has a major impact on growth, conidiation and secondary metabolism in F. fujikuroi

Organism:

Fusarium fujikuroi

Type:

Expression profiling by array

Platform:

GPL16547

12 Samples

Download data: PAIR

(Submitter supplied) We performed genome-wide transcriptome and proteome analyses of the Fusarium fujikuroi wild type and ΔAREA and ΔAREB mutants under nitrogen limitation and excess. Microarray analysis revealed that each transcription factor regulates a total set of about 4200 genes under nitrogen limiting conditions with an enrichment of genes belonging to functional classes of primary/secondary metabolism, transporters, cell defense/virulence and transcription. more...

Organism:

Fusarium fujikuroi

Type:

Expression profiling by array

Platform:

GPL21751

12 Samples

Download data: TXT, XYS

(Submitter supplied) Chaetomium globosum  is a model of conditional pathogens abundant on a wide variety of substrates in soil, water, and atmosphere environments. Homothallic C. globosum produces hairy perithecia bearing meiotic ascospores that are resistant to harsh conditions for dispersal, and asexual reproduction of conidia has never been observed. RNAs were samples from nine distinct morphological stages during the nearly synchronic perithecial development for C. more...

Organism:

Chaetomium globosum CBS 148.51

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26665

22 Samples

Download data: XLSX

(Submitter supplied) Fusarium graminearum and F. verticillioides are devastating cereal pathogens with very different life history and ecological characteristics. F. graminearum is homothallic, and sexual spores are an important component of its life cycle, responsible for disease initiation. F. verticilloides is heterothallic, and produces only modest numbers of fruiting bodies, which are not a significant source of inoculum. more...

Organism:

Fusarium verticillioides; Fusarium graminearum

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL19247 GPL19248

12 Samples

Download data: TXT

(Submitter supplied) Fungi exhibit a huge diversity in morphology and ecology, and genetic basis of morphological development in sexual reproduction of multi-cellular fungi has not been fully investigated with genome-wide approaches. Model organism Neurospora crassa is the very first sequenced genome for multi-cellular fungi, and well-annotated genome and gene markers characterized for key morphological traits make N. crassa an ideal platform to investigate transcriptome and its regulation during sexual development. more...

Organism:

Neurospora crassa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16164

16 Samples

Download data: TXT

(Submitter supplied) We provide genome sequences of altogether 9 F. fujikuroi and one F. oxysporum (outgroup) strains, all isolated from rice plants in different geographical regions of the world, and searched for differences in genome structure, chromosome size, secondary metabolite production, virulence on rice, and in vitro and in planta transcriptome profiles. Despite their high relatedness on genome level, they differ significantly in their ability to infect rice, to form asexual spores (micro-and macroconidia), and to produce secondary metabolites. more...

Organism:

Fusarium oxysporum; Fusarium fujikuroi

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL22481 GPL22633

30 Samples

Download data: TXT