GEO DataSets

(Submitter supplied) Here, we used RNA-seq to quantify expression conservation across many Ascomycete yeasts.

Organism:

Lachancea waltii; Saccharomyces cerevisiae; Candida albicans; Schizosaccharomyces japonicus; Schizosaccharomyces octosporus; Saccharomyces bayanus; Yarrowia lipolytica; Naumovozyma castellii; Schizosaccharomyces pombe; Nakaseomyces glabratus; Kluyveromyces lactis

Type:

Expression profiling by high throughput sequencing

11 related Platforms

11 Samples

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(Submitter supplied) In order to generate data produce a generalizable sequence-to-expression model, we randomly sampled ~21 million 80 bp sequences and tested their activity as promoters (in yeast) by measuring expression level by FACS (sorting into 18 bins).

Organism:

Saccharomyces cerevisiae

Type:

Other

Platform:

GPL19756

36 Samples

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(Submitter supplied) Spontaneous mutations were accumulated in haploid strains of yeast. Expression profiling was performed on four MA lines and the ancestor in a complete loop design. Keywords: Gene expression profiling

Organism:

Saccharomyces cerevisiae

Type:

Expression profiling by array

Platform:

GPL5092

10 Samples

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(Submitter supplied) Adaptive evolution is generally assumed to progress through the accumulation of beneficial mutations. However, deleterious mutations may also have an important role by promoting adaptive genetic changes that are otherwise inaccessible. Here we study the capacity of the baker’s yeast genome to compensate the complete loss of genes during evolution, and explore the long-term consequences of this process. more...

Organism:

Saccharomyces cerevisiae BY4741; Saccharomyces cerevisiae

Type:

Expression profiling by array

Platform:

GPL11232

34 Samples

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(Submitter supplied) Alteration of normal ploidy (aneuploidy) is an important mechanism of evolution of species. It has been linked to a rapid response to stress and is regarded as a hallmark of cancer. While increased genomic instability of aneuploid cells can accelerate genetic diversification and facilitate adaptation, these cells also face the adverse effects of gene imbalance, resulting in fitness cost. Here, to understand the mechanisms through which cells respond to aneuploidy and develop tolerance leading to fitness restoration, we subjected disomic (i.e. more...

Organism:

Saccharomyces cerevisiae W303

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25517

45 Samples

Download data: TSV