GEO DataSets

(Submitter supplied) We investigate tissue transcriptomic evolution across bilaterian animals by analyzing RNA-seq data from eight different tissues across twenty species.

Organism:

Blattella germanica; Strongylocentrotus purpuratus; Octopus bimaculoides; Strigamia maritima; Tribolium castaneum; Aedes aegypti; Xenopus tropicalis; Cloeon dipterum; Branchiostoma lanceolatum; Danio rerio; Bombyx mori; Drosophila melanogaster; Callorhinchus milii; Monodelphis domestica; Episyrphus balteatus

Type:

Expression profiling by high throughput sequencing

15 related Platforms

89 Samples

Download data: TSV

(Submitter supplied) We report the mRNA found in hypothalamus and liver tissue of a migratory bird. The aim of this study was to study how the mRNA makeup of tissue varies under different seasonal states.

Organism:

Emberiza melanocephala

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24173

4 Samples

Download data: GTF

(Submitter supplied) 4C-seq experiments to study the evolution of the chromatin architecture of ancient gene regulatory blocks at the origin of vertebrates.

Organism:

Branchiostoma lanceolatum; Danio rerio; Mus musculus

Type:

Other

Platforms:

GPL20177 GPL13112 GPL14875

12 Samples

Download data: BEDGRAPH

(Submitter supplied) In the fall, Eastern North American monarch butterflies (Danaus plexippus) undergo a magnificent long-range migration. In contrast to spring and summer butterflies, fall migrants are juvenile hormone deficient, which leads to reproductive arrest and increased longevity. Migrants also use a time-compensated sun compass to help them navigate in the south/southwesterly direction en route for Mexico. Central issues in this area are defining the relationship between juvenile hormone status and oriented flight, critical features that differentiate summer monarchs from fall migrants, and identifying molecular correlates of behavioral state. Here we show that increasing juvenile hormone activity to induce summer-like reproductive development in fall migrants does not alter directional flight behavior or its time-compensated orientation, as monitored in a flight simulator. Reproductive summer butterflies, in contrast, uniformly fail to exhibit directional, oriented flight. To define molecular correlates of behavioral state, we used microarray analysis of 9417 unique cDNA sequences. Gene expression profiles reveal a suite of 40 genes whose differential expression in brain correlates with oriented flight behavior in individual migrants, independent of juvenile hormone activity, thereby separating molecularly fall migrants from summer butterflies. Intriguing genes that are differentially regulated include the clock gene vrille and the locomotion-relevant tyramine beta hydroxylase gene. In addition, several differentially regulated genes (37.5% of total) are not annotated, suggesting unique functions associated with oriented flight behavior. We also identified 23 juvenile hormone-dependent genes in brain, which separate reproductive from non-reproductive monarchs; genes involved in longevity, fatty acid metabolism, and innate immunity are upregulated in non-reproductive (juvenile-hormone deficient) migrants. The results link key behavioral traits with gene expression profiles in brain that differentiate migratory from summer butterflies and thus show that seasonal changes in genomic function help define the migratory state.

Organism:

Danaus plexippus

Type:

Expression profiling by array

Platform:

GPL7829

40 Samples

Download data: TXT

(Submitter supplied) Here, we examined the transcriptomic changes associated with diapause and CO2 treatment in B. terrestris queens before, during and post diapause and in the short and long term after CO2 treatment

Organism:

Bombus terrestris

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL19585 GPL20914

25 Samples

Download data: GFF, TXT