GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Arabidopsis thaliana

Type:

Genome binding/occupancy profiling by genome tiling array

Platform:

GPL1979

12 Samples

Download data: CEL

(Submitter supplied) Trimethylation of histone H3 lysine27 (H3K27me3) plays critical roles in regulating animal development, and in several cases, H3K27me3 is also required for the proper expression of developmentally important genes in plants. However, the extent to which H3K27me3 regulates plant genes on a genome-wide scale remains unknown. In addition, it is not clear whether the establishment and spreading of H3K27me3 occur through the same mechanisms in plants and animals. more...

Organism:

Arabidopsis thaliana

Type:

Genome binding/occupancy profiling by genome tiling array

Platform:

GPL1979

4 Samples

Download data: CEL

(Submitter supplied) Trimethylation of histone H3 lysine27 (H3K27me3) plays critical roles in regulating animal development, and in several cases, H3K27me3 is also required for the proper expression of developmentally important genes in plants. However, the extent to which H3K27me3 regulates plant genes on a genome-wide scale remains unknown. In addition, it is not clear whether the establishment and spreading of H3K27me3 occur through the same mechanisms in plants and animals. more...

Organism:

Arabidopsis thaliana

Type:

Genome binding/occupancy profiling by genome tiling array

Platform:

GPL1979

4 Samples

Download data: CEL

(Submitter supplied) Trimethylation of histone H3 lysine27 (H3K27me3) plays critical roles in regulating animal development, and in several cases, H3K27me3 is also required for the proper expression of developmentally important genes in plants. However, the extent to which H3K27me3 regulates plant genes on a genome-wide scale remains unknown. In addition, it is not clear whether the establishment and spreading of H3K27me3 occur through the same mechanisms in plants and animals. more...

Organism:

Arabidopsis thaliana

Type:

Genome binding/occupancy profiling by genome tiling array

Platform:

GPL1979

4 Samples

Download data: CEL

(Submitter supplied) 1. Oligo length: 36 2. Minimum oligonucleotide Tm: 80 3. Maximum oligonucleotide Tm: 95 4. Temperature to use during secondary structure prediction (an oligo will be rejected if it can fold into a stable secondary structure at this temperature): 65 5. Threshold to report putative cross-hybridizations (all targets hybridizing with a given oligo with a Tm exceeding this threshold are reported): 70 6. Minimum oligonucleotide GC content: 40 7. Maximum oligonucleotide GC content: 73 for gene models; 77 for TARs 8. Minimum distance between the 5' end of two adjacent oligos: 1 BAC fasta and description files linked as supplementary files

Organism:

Glycine max

2 Series

6 Samples

Download data: PDF, TXT

(Submitter supplied) 1. Oligo length: 36 2. Minimum oligonucleotide Tm: 80 3. Maximum oligonucleotide Tm: 95 4. Temperature to use during secondary structure prediction (an oligo will be rejected if it can fold into a stable secondary structure at this temperature): 65 5. Threshold to report putative cross-hybridizations (all targets hybridizing with a given oligo with a Tm exceeding this threshold are reported): 70 6. Minimum oligonucleotide GC content: 40 7. Maximum oligonucleotide GC content: 73 for gene models; 77 for TARs 8. Minimum distance between the 5' end of two adjacent oligos: 1 BAC fasta and description files linked as supplementary files

Organism:

Medicago truncatula

2 Series

6 Samples

Download data: PDF, TXT