txid1047171[Organism] - GEO DataSets

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Select item 2002506051.

Wheat resistance response triggered upon recognition of the avirulence factor AvrStb6 hinders the penetration of Zymoseptoria tritici through stomata

(Submitter supplied) Wheat (Chisenese Spring) and Zymoseptoria tritici AvrStb6-expressing virulent and avirulent strains transcriptomes analyses

Organism:: Triticum aestivum; Zymoseptoria tritici

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL25409 GPL34025
36 Samples

Download data: TXT

Series

Accession:: GSE250605

ID:: 200250605

Select item 2002840562.

Responses to temperature shocks in Zymoseptoria tritici reveal specific transcriptional reprogramming and novel candidate genes for thermal adaptation

(Submitter supplied) The transcriptomic response of Zymoseptoria tritici IPO323 spores under heat and cold shock.

Organism:: Zymoseptoria tritici

Type:: Expression profiling by high throughput sequencing

Platform:: GPL35186
18 Samples

Download data: TXT

Series

Accession:: GSE284056

ID:: 200284056

Select item 2002188983.

Improved genome annotation of the fungal wheat pathogen Zymoseptoria tritici IPO323 using Iso-Seq and RNA-Seq data

(Submitter supplied) To reannotate the genome of Zymoseptoria tritici IPO323, RNA-Seq and Iso-Seq runs were performed on different growth media to provide new source of evidence for gene model predictors. New gene models were predicted and combined with existing annotation releases. Finally, selection of best gene models was done by congruence with evidence data like transcript assembled from RNA-Seq, Iso-Seq cDNA and fungal proteins from databases.

Organism:: Zymoseptoria tritici

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL32891 GPL32892
38 Samples

Download data: GFF

Series

Accession:: GSE218898

ID:: 200218898

Select item 2002256234.

Fungal plant pathogen “mutagenomics” reveals tagged and untagged mutations in Zymoseptoria tritici and identifies SSK2 as key morphogenesis and stress-responsive virulence factor

(Submitter supplied) 'Mutagenomics' is a combination approach of random mutagenesis, phenotypic screening, and whole-genome re-sequencing to uncover all tagged and untagged mutations linked with phenotypic changes in an organism. In this study, we performed a mutagenomics screen on the wheat pathogenic fungus Zymoseptoria tritici for altered morphogenetic switching and stress sensitivity phenotypes using Agrobacterium-mediated “random” T-DNA mutagenesis (ATMT). more...

Organism:: Triticum aestivum; Zymoseptoria tritici IPO323

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33143
12 Samples

Download data: GTF, TSV, TXT

Series

Accession:: GSE225623

ID:: 200225623

PubMed Full text in PMC Similar studies

Select item 2002221645.

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

(Submitter supplied) Background: Studying genomic variation in rapidly evolving pathogens potentially enables definition of genes supporting their “core biology” present, functional and expressed by all strains or “flexible biology”, varying between strains. Genes supporting flexible biology may be considered to be “accessory”, whilst the “core” gene set is likely to be important for common features of a pathogen species biology, including virulence on all host genotypes. more...

Organism:: Triticum aestivum; Zymoseptoria tritici

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL23509 GPL33003
114 Samples

Download data: FASTA, TXT

Series

Accession:: GSE222164

ID:: 200222164

PubMed Full text in PMC Similar studies

Select item 2001061366.

Transcriptome analyses of three Zymoseptoria tritici isolates during infection of Triticum aestivum

(Submitter supplied) We collected infected wheat leaf material at up to nine time points per Z. tritici isolate and conducted confocal microscopy analyses to select samples for RNA extraction and transcriptome sequencing based on the morphological infection stage. Thereby, we generated stage-specific RNA-seq datasets corresponding to the four core infection stages allowing us to compare the isolate-specific expression profiles at the same developmental stage of infection. more...

Organism:: Triticum aestivum; Zymoseptoria tritici

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24181
24 Samples

Download data: TXT

Series

Accession:: GSE106136

ID:: 200106136

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000586727.

Next generation RNA sequencing to identify overexpressed transporter genes in Zymoseptoria tritici field strains

(Submitter supplied) Septoria leaf blotch is a worldwide threat for wheat and mainly controlled by the application of synthetic fungicides. The fungal pathogen responsible for this disease, Zymoseptoria tritici, was shown as highly adaptable to its host plant, but also to fungicide challenge. Over the past decades it developed resistance to most fungicides due to target site modifications. Recently isolated strains showed cross-resistance to diverse fungicides and to unrelated drugs, suggesting a resistance mechanism that seems rarer in phytopathogenic fungi, known as multidrug resistance (MDR) in other organisms. more...

Organism:: Zymoseptoria tritici

Type:: Expression profiling by high throughput sequencing

Platform:: GPL18273
12 Samples

Download data: TXT

Series

Accession:: GSE58672

ID:: 200058672

PubMed Similar studies SRA Run Selector

Select item 2000548748.

Transcriptome sequencing at early stage infection of the wheat pathogen Zymoseptoria tritici reveals chromosomal differences in transcription patterns and host specific gene expression.

(Submitter supplied) We have applied whole transcriptome profiling to infer genetic determinants of pathogenicity and host specialization in Z. tritici. Our data includes RNAseq data from early infection stages of a compatible (wheat) and a non-compatible host (Brachypodium distachyon). Overall transcription of AC genes is remarkably lower than genes on core chromosomes (CC) and only 40% of the genes are transcribed. We identify 31 AC and 1069 CC genes showing plant specific expression. more...