GEO DataSets

(Submitter supplied) Epigenetic modification is important for cellular functions. Trimethylation of histone H3 lysine 4 (H3K4me3), which associates with transcriptional activation, is one of the important epigenetic modifications. In this study, the biological functions of UvKmt2-mediated H3K4me3 modification were characterized in Ustilaginoidea virens, which is the causal agent of the false smut disease, one of the most destructive diseases in rice. more...

Organism:

Ustilaginoidea virens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27887

6 Samples

Download data: TXT

(Submitter supplied) Epigenetic modification is important for cellular functions. Trimethylation of histone H3 lysine 4 (H3K4me3), which associates with transcriptional activation, is one of the important epigenetic modifications. In this study, the biological functions of UvKmt2-mediated H3K4me3 modification were characterized in Ustilaginoidea virens, which is the causal agent of the false smut disease, one of the most destructive diseases in rice. more...

Organism:

Ustilaginoidea virens

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL27887

8 Samples

Download data: BEDGRAPH, TXT

(Submitter supplied) Transcription factor UvCGBP1 (Cutinase G-box binding protein) is a new transcription factor and it specificlly distributed in Ascomycetes.We used ChIP-seq identified more than 2000 target genes, we provide a comprehensive genome-wide binding map of CGBP1 and its regulatory network. Our results reveal new insights into the mechanism of CGBP1-mediated gene regulation in the plant fungal pathogen.

Organism:

Ustilaginoidea virens

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL27887

3 Samples

Download data: TXT

(Submitter supplied) To understand pathogenicity and in planta transcriptional reprogramming, expression profiles of U. virens during infection of the resistant and susceptible cultivars were analyzed using RNA-seq data. Predicted host-pathogen interaction database (PHI-base) genes that are probably involved in host-pathogen interactions were found to be significantly enriched in fungal differential expressed genes from both rice genotypes, indicating their potential roles in pathogenicity of U.virens. more...

Organism:

Ustilaginoidea virens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22479

7 Samples

Download data: TXT