GEO DataSets

(Submitter supplied) In the pre-laboratory study, a GntR family regulatory gene bm0677 was discovered. In this study, we found that colony morphology of the bm0677 mutant strain was changed. And the ability to produce biofilm of the mutant in MSgg solid and liquid medium was repressed, which proposed that this gene was involved in regulation of biofilm formation. Then we used transcriptome sequencing (RNA-Seq) to analyze how the regulator Bm0677 was involved in the regulation of biofilm formation. more...

Organism:

Bacillus velezensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32086

6 Samples

Download data: TXT

(Submitter supplied) The microbiome has revealed itself as a key player in health and disease. To better understand its role, in addition to microbial diversity, it is important to understand species-specific activity and gene expression. While metatranscriptomics investigates mRNA abundance2, it does not inform about faster post-transcriptional regulation3. Although prokaryotic translation is a common target for antibiotics, a direct measurement of microbiome ribosome dynamics remains inaccessible. more...

Organism:

Listeria monocytogenes; Saccharomyces cerevisiae; Salmonella enterica; Parabacteroides merdae; Segatella copri; Alistipes finegoldii; Hoylesella timonensis; compost metagenome; Enterococcus faecalis; Bacillus subtilis; Limosilactobacillus reuteri; Limosilactobacillus fermentum; human feces metagenome; Escherichia coli; Synechocystis sp. PCC 6803; Staphylococcus aureus; Bacillus amyloliquefaciens; Lactiplantibacillus plantarum; Cryptococcus neoformans; Caulobacter vibrioides

Type:

Other

17 related Platforms

199 Samples

Download data: BEDGRAPH, TXT, XLSX

(Submitter supplied) In this study, an in vitro antifungal growth experiment showed that the inhibitory rate of the MCF broth on pathogenic fungi (Fusarium oxysporum f. sp. lycopersici, Botrytis cinerea, Trichothecium roseum, and Colletotrichum gloeosporioides) was less than that of B. amyloliquefaciens culture fermentation (BCF). Moreover, the content and gene expression of lipopeptide antibiotics was also lower than that in the BCF group. more...

Organism:

Bacillus amyloliquefaciens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29388

2 Samples

Download data: TXT

(Submitter supplied) We report the application of a high-throughput technique, RNA-seq, to study the transcriptomic response of P. chlororaphis and Bacillus amyloliquefaciens growing in co-cultures in King B solid medium

Organism:

Pseudomonas chlororaphis; Bacillus amyloliquefaciens

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL29389 GPL29388 GPL29387

12 Samples

Download data: XLSX

(Submitter supplied) not provided; requested

Organism:

Bacillus velezensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27131

6 Samples

Download data: XLSX

(Submitter supplied) The transcriptome of 8 strains were studied during 7 stages of the Morphological phases of sporulation P0 = Resuspention of cells in sporulation medium; P1 = Onset of sporulation before asymmetric division; P2 = Visible asymmetric septum; P3 = Ongoing engulfment of the forespore compartment by the mother cell compartment of sporulating cells; P4 = Completed engulfment (engulfed phase-dark forespores are surrounded by the mother-cell cytoplasm); P5 = Maturation (ongoing dehydration of the forespore core seen as a transition of phase-dark forespores into phase-bright foresppores); P6 = Phase-bright forespores (sporulation almost completed, mother-cells contain phase-bright dehydrated forespores).

Organism:

Bacillus subtilis; Bacillus amyloliquefaciens

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL23851 GPL24453

112 Samples

Download data: GFF, RPKM

(Submitter supplied) Bacillus amyloliquefaciens FZB42 is a representative organism for Gram positive soil bacteria associated with plant roots and beneficial to plant growth. It is of immense importance to understand mechanisms of this class of bacteria adapting to rhizosphere. In this work employing differential RNA sequencing (RNA-seq) and Northern blot, we systematically identified transcription start sites of mRNAs as well as non-coding regulatory RNAs in FZB42. more...

Organism:

Bacillus velezensis FZB42

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19866

12 Samples

Download data: WIG

(Submitter supplied) Root exudates play an important role in plant-microbe interaction. The transcriptional profilings of plant growth-promoting rhizobacteria Bacillus amyloliquefaciens SQR9 in response to maize root exudates under static condition, were investigated by an Illumina RNA-seq for understanding the regulatory roles of the root exudates.

Organism:

Bacillus amyloliquefaciens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18285

4 Samples

Download data: TXT