txid2237[Organism] - GEO DataSets

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Select item 2002270321.

Genome-wide binding of TrmB in Haloarcula hispanica

(Submitter supplied) Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) from TrmB in the halophilic archaeon Haloarcula hispanica in the presence and absense of glucose.

Organism:: Haloarcula hispanica ATCC 33960

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL33237
16 Samples

Download data: BED, BEDGRAPH

Series

Accession:: GSE227032

ID:: 200227032

Select item 2002270312.

Transciptome profile of TrmB in Haloarcula hispanica

(Submitter supplied) Transcripome profiling (RNA-seq) of TrmB in the halophilic archaeon Haloarcula hispanica in the presence and absense of glucose after 24 hours.

Organism:: Haloarcula hispanica ATCC 33960

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33236
32 Samples

Download data: CSV

Series

Accession:: GSE227031

ID:: 200227031

Select item 2002270343.

TrmB in Haloarcula hispanica

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Haloarcula hispanica ATCC 33960

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL33236 GPL33237
48 Samples

Download data: BED, BEDGRAPH

Series

Accession:: GSE227034

ID:: 200227034

Select item 2002007764.

Testing different rRNA removal methods in 4 species of model halophilic archaea

(Submitter supplied) We tested a number of rRNA removal methods (Illumina RiboZero Plus, NEBNext, NEB Core Depletion Set with custom probes, siTools Panarchaea, siTools RiboPool) on 4 model halophile species: Halobacterium salinarum, Haloferax volcanii, Haloferax meditteranei, Haloarcula hispanica). It was found that methods using custom probes (NEB Core Depletion set with HVO probes, siTools RiboPool with HVO probes) efficiently remove rRNA in species they are targeted to, and that Panarchaea efficiently removes rRNA in all 4 tested species.

Organism:: Haloferax volcanii; Haloferax mediterranei; Haloarcula hispanica; Halobacterium salinarum

Type:: Expression profiling by high throughput sequencing

4 related Platforms
39 Samples

Download data: TXT

Series

Accession:: GSE200776

ID:: 200200776

PubMed Full text in PMC Similar studies

Select item 2000428005.

Proteome reference map of Haloarcula hispanica and comparative proteomic and transcriptomic analysis of polyhydroxyalkanoate biosynthesis under genetic and environmental perturbations

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Haloarcula hispanica

Type:: Expression profiling by array

Platform:: GPL16357
6 Samples

Download data: LSR

Series

Accession:: GSE42800

ID:: 200042800

Select item 2000427996.

Genes differentially expressed Haloarcula hispanica strains: PHB (ΔphaEC mutant) vs 960 (wild type)

(Submitter supplied) Transcriptional profiling of Haloarcula hispanica comparing PHB with 960. PHB represents the PHA synthase genes mutant (i.e., ΔphaEC) which is deficient in PHBV accumulation when grown in MG medium. 960 represents the wild-type strain which can produce PHBV when grown in MG medium. Goal was to explore the PHBV biosynthesis and its impact on central metabolism in H. hispanica.

Organism:: Haloarcula hispanica

Type:: Expression profiling by array

Platform:: GPL16357
3 Samples

Download data: LSR

Series

Accession:: GSE42799

ID:: 200042799

Select item 2000427987.

Haloarcula hispanica wild-type strain cultured in different media: MG vs 168

(Submitter supplied) Transcriptional profiling of Haloarcula hispanica wild-type strain cultured in different media comparing MG medium with 168 medium. H. hispanica wild-type strain can accumulate PHBV in MG medium, while can not in 168 medium. Goal was to explore the PHA biosynthesis and its impact on central metabolism in H. hispanica.

Organism:: Haloarcula hispanica

Type:: Expression profiling by array

Platform:: GPL16357
3 Samples

Download data: LSR

Series

Accession:: GSE42798

ID:: 200042798

Select item 1000332378.

Illumina HiSeq 4000 (Haloarcula hispanica ATCC 33960)

Organism:: Haloarcula hispanica ATCC 33960

2 Series
16 Samples

Download data

Platform

Accession:: GPL33237

ID:: 100033237

Select item 1000332369.

Illumina NovaSeq 6000 (Haloarcula hispanica ATCC 33960)

Organism:: Haloarcula hispanica ATCC 33960

2 Series
32 Samples

Download data

Platform

Accession:: GPL33236

ID:: 100033236

Select item 10003216610.

Illumina NovaSeq 6000 (Haloarcula hispanica)

Organism:: Haloarcula hispanica

1 Series
3 Samples

Download data

Platform

Accession:: GPL32166

ID:: 100032166

Select item 10001635711.

Agilent-026566 Halophiles_HAH49 oligo array v1

(Submitter supplied) Haloarcula hispanica 8*15K oligo array version 1.0 Halophiles_HAH49_4920 Arrays of this design have barcodes that begin with 16026566 or 2526566. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. more...