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Items: 1 to 20 of 99

1.

Next generation sequencing (NGS) allows identification of differentially regulated genes during Bacteroides growth on xylose:arabinose and insoluble wheat arabinoxylan

(Submitter supplied) Purpose: Identify differentially regulated genes in three Bacteroides species (B. intestinalis, B. cellulosylitycus, and B. oleiciplenus) under xylose:arabinose growth compared to insoluble wheat arabinoxylan Methods: Bacterial mRNA profiles of mid-log cultures were generated by deep sequencing using Illumina 4000, in duplicates. The sequences were trimmed based on quality scores using Trimmomatic.
Organism:
Bacteroides cellulosilyticus; Bacteroides intestinalis; Bacteroides oleiciplenus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL29416 GPL29415 GPL29414
12 Samples
Download data: CSV
Series
Accession:
GSE161471
ID:
200161471

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome (RNA-Seq)

(Submitter supplied) The human gut microbiota is an important metabolic organ, yet little is known about how its individual species interact, establish dominant positions, and respond to changes in environmental factors such as diet. In this study, gnotobiotic mice were colonized with an artificial microbiota comprising 12 sequenced human gut bacterial species and fed oscillating diets of disparate composition. Rapid, reproducible, and reversible changes in the structure of this assemblage were observed. more...
Organism:
Bacteria; Bacteroides cellulosilyticus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL17330 GPL17468
116 Samples
Download data: TXT
Series
Accession:
GSE48993
ID:
200048993

PubMed Full text in PMC Similar studies SRA Run Selector

3.

Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Bacteroides cellulosilyticus; Bacteroides sp. WH2; Dorea longicatena DSM 13814; [Clostridium] scindens ATCC 35704; Faecalibacterium prausnitzii M21/2; Collinsella aerofaciens ATCC 25986; Thomasclavelia spiroformis DSM 1552; Bacteria; Bacteroides ovatus ATCC 8483; Bacteroides uniformis ATCC 8492; Phocaeicola vulgatus ATCC 8482; Parabacteroides distasonis ATCC 8503; Bacteroides thetaiotaomicron VPI-5482; Blautia obeum ATCC 29174; [Ruminococcus] torques ATCC 27756; Bacteroides caccae ATCC 43185; Agathobacter rectalis ATCC 33656
Type:
Expression profiling by high throughput sequencing; Other; Expression profiling by array
5 related Platforms
895 Samples
Download data: CEL, CHP, TXT
Series
Accession:
GSE48537
ID:
200048537

PubMed Full text in PMC Similar studies Analyze with GEO2R

4.

Illumina HiSeq 4000 (Bacteroides cellulosilyticus)

Organism:
Bacteroides cellulosilyticus
1 Series
4 Samples
Download data
Platform
Accession:
GPL29414
ID:
100029414

5.

Illumina HiSeq 2000 (Bacteroides cellulosilyticus)

Organism:
Bacteroides cellulosilyticus
2 Series
90 Samples
Download data
Platform
Accession:
GPL17468
ID:
100017468

6.

Bcel_Xyl rep2

Organism:
Bacteroides cellulosilyticus
Source name:
Bacterial cells
Platform:
GPL29414
Series:
GSE161471
Download data
Sample
Accession:
GSM4907831
ID:
304907831

SRA Run Selector

7.

Bcel_Xyl rep1

Organism:
Bacteroides cellulosilyticus
Source name:
Bacterial cells
Platform:
GPL29414
Series:
GSE161471
Download data
Sample
Accession:
GSM4907829
ID:
304907829

SRA Run Selector

8.

Bcel_InWAX rep2

Organism:
Bacteroides cellulosilyticus
Source name:
Bacterial cells
Platform:
GPL29414
Series:
GSE161471
Download data
Sample
Accession:
GSM4907817
ID:
304907817

SRA Run Selector

9.

Bcel_InWAX rep1

Organism:
Bacteroides cellulosilyticus
Source name:
Bacterial cells
Platform:
GPL29414
Series:
GSE161471
Download data
Sample
Accession:
GSM4907815
ID:
304907815

SRA Run Selector

10.

GlcA 1

Organism:
Bacteroides cellulosilyticus
Source name:
In vitro bacterial culture, D-Glucuronic acid sodium salt monohydrate
Platform:
GPL17468
Series:
GSE48537 GSE48993
Download data: TXT
Sample
Accession:
GSM1191885
ID:
301191885

SRA Run Selector

11.

Arab 3

Organism:
Bacteroides cellulosilyticus
Source name:
In vitro bacterial culture, Arabinan (Sugar Beet)
Platform:
GPL17468
Series:
GSE48537 GSE48993
Download data: TXT
Sample
Accession:
GSM1191884
ID:
301191884

SRA Run Selector

12.

Fuc 2

Organism:
Bacteroides cellulosilyticus
Source name:
In vitro bacterial culture, L-(-)-Fucose
Platform:
GPL17468
Series:
GSE48537 GSE48993
Download data: TXT
Sample
Accession:
GSM1191883
ID:
301191883

SRA Run Selector

13.

OSX 2

Organism:
Bacteroides cellulosilyticus
Source name:
In vitro bacterial culture, Xylan from oat spelts
Platform:
GPL17468
Series:
GSE48537 GSE48993
Download data: TXT
Sample
Accession:
GSM1191882
ID:
301191882

SRA Run Selector

14.

GalNAc 1

Organism:
Bacteroides cellulosilyticus
Source name:
In vitro bacterial culture, N-Acetyl-D-galactosamine
Platform:
GPL17468
Series:
GSE48537 GSE48993
Download data: TXT
Sample
Accession:
GSM1191881
ID:
301191881

SRA Run Selector

15.

Man 1

Organism:
Bacteroides cellulosilyticus
Source name:
In vitro bacterial culture, D-(+)-Mannose
Platform:
GPL17468
Series:
GSE48537 GSE48993
Download data: TXT
Sample
Accession:
GSM1191880
ID:
301191880

SRA Run Selector

16.

AG 2

Organism:
Bacteroides cellulosilyticus
Source name:
In vitro bacterial culture, Arabinogalactan (Larch Wood)
Platform:
GPL17468
Series:
GSE48537 GSE48993
Download data: TXT
Sample
Accession:
GSM1191879
ID:
301191879

SRA Run Selector

17.

Cello 3

Organism:
Bacteroides cellulosilyticus
Source name:
In vitro bacterial culture, D-(+)-Cellobiose
Platform:
GPL17468
Series:
GSE48537 GSE48993
Download data: TXT
Sample
Accession:
GSM1191878
ID:
301191878

SRA Run Selector

18.

Pul 1

Organism:
Bacteroides cellulosilyticus
Source name:
In vitro bacterial culture, Pullulan from Aureobasidium pullulans
Platform:
GPL17468
Series:
GSE48537 GSE48993
Download data: TXT
Sample
Accession:
GSM1191877
ID:
301191877

SRA Run Selector

19.

Fru 2

Organism:
Bacteroides cellulosilyticus
Source name:
In vitro bacterial culture, D-(-)-Fructose
Platform:
GPL17468
Series:
GSE48537 GSE48993
Download data: TXT
Sample
Accession:
GSM1191876
ID:
301191876

SRA Run Selector

20.

Fuc 1

Organism:
Bacteroides cellulosilyticus
Source name:
In vitro bacterial culture, L-(-)-Fucose
Platform:
GPL17468
Series:
GSE48537 GSE48993
Download data: TXT
Sample
Accession:
GSM1191875
ID:
301191875

SRA Run Selector

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