GEO DataSets

(Submitter supplied) In this study we analyzed the effects of an altered Cas13a expression in vivo, in presence or absence of ectopically expressed protospacer RNA (plasmid pCV2_SB6), by RNA-sequencing. The genomic modification of the cas13a controlling promoter enables altered expression of cas13a by adding either subinhibitory crystal violet (CV) concentrations (for transcriptional repression of cas13a), or additionally IPTG (for transcriptional induction of cas13a), to the mutant cultures. more...

Organism:

Rhodobacter capsulatus SB 1003

Type:

Expression profiling by high throughput sequencing

Platform:

GPL34167

21 Samples

Download data: WIG

(Submitter supplied) We report a complex operon architecture for R. capsulatus: operons with multiple TSSs and TTSs, genomic regions of high transcriptional activity and novel transcripts. In addition, we present a new 5' and 3' targeted sequencing method for the Ion Torrent PGM. TEX+ and TEX- indicates if the dRNA-seq library was treated with Terminator 5'-Phosphate-Dependent Exonuclease or not. Treatment with TEX degrades every RNA that does not have a 5'-PPP.

Organism:

Rhodobacter capsulatus SB 1003; Rhodobacter capsulatus DE442

Type:

Expression profiling by high throughput sequencing; Other

Platforms:

GPL25365 GPL25364

18 Samples

Download data: BED

(Submitter supplied) Global transcriptome analyses at growth before and after 10 min of photooxidative stress were applied to monitor stress dependent gene expression in the alpha-proteobacterium Rhodobacter capsulatus. Transcriptome profiles of pigmented cultures with high aeration were monitored before and after the onset of singlet oxygen stress.

Organism:

Rhodobacter capsulatus SB 1003

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26909

6 Samples

Download data: XLSX

(Submitter supplied) Gene Transfer Agents (GTAs) are small virus-like particles that transfer random fragments of host bacterial DNA between cells. Unlike true viruses, whose primary aim is self-preservation, GTAs have no preference for the spread of their own genes. GTAs are typically produced from less than 1% of the population, making in-depth analysis of producer cells problematic. Here, we compared the transcriptome of wild-type R. more...

Organism:

Rhodobacter capsulatus SB 1003; Rhodobacter capsulatus DE442

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL25420 GPL25421

12 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Corynebacterium glutamicum; Bacillus subtilis subsp. subtilis str. 168; Pseudomonas putida KT2440; Rhodobacter capsulatus SB 1003; Allochromatium vinosum DSM 180; Escherichia coli str. K-12 substr. MG1655; Pseudomonas aeruginosa PAO1

Type:

Expression profiling by array

Platforms:

GPL16587 GPL16588

13 Samples

Download data: GPR

(Submitter supplied) The purple sulfur bacterium Allochromatium vinosum DSM 180T is one of the best studied sulfur-oxidizing anoxygenic phototrophic bacteria and has been developed into a model organism for laboratory-based studies of oxidative sulfur metabolism. Here, we took advantage of the organism’s high metabolic versatility and performed whole-genome transcriptional profiling to investigate the response of A. vinosum cells upon exposure to sulfide, thiosulfate, elemental sulfur or sulfite as compared to photoorganoheterotrophic growth on malate. more...

Organism:

Rhodobacter capsulatus SB 1003; Escherichia coli str. K-12 substr. MG1655; Allochromatium vinosum DSM 180; Bacillus subtilis subsp. subtilis str. 168

Type:

Expression profiling by array

Platform:

GPL16587

9 Samples

Download data: GPR

(Submitter supplied) Allochromatium vinosum DSM 180T (NC_013851), Escherichia coli MG1655 (NC_000913), Bacillus subtilis str. 168 (NC_000964), Rhodobacter capsulatus SB 1003 (NC_014034) Protocol: see Agilent Technologies

Organism:

Bacillus subtilis subsp. subtilis str. 168; Rhodobacter capsulatus SB 1003; Escherichia coli str. K-12 substr. MG1655; Allochromatium vinosum DSM 180

2 Series

9 Samples

Download data: GAL