txid28256[Organism] - GEO DataSets

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Select item 2001592331.

Influence of 3HP and PDO on cell metabolism at the transcriptional level in Halomonas bluephagenesis

(Submitter supplied) To investigate degradation genes in the 3HP degradation pathway, transcriptome sequencing was performed under culture conditions with and without 3HP as the carbon source. Overall, in the presence of 3HP as a sole carbon source, 384 genes were upregulated while 210 downregulated. Among them, we identified two 3HP degradation genes, GME_RS01260 encoding choline dehydrogenase (RefSeq. Accession: WP_009721523) and GME_RS01255 encoding CoA-acylating methylmalonate-semialdehyde dehydrogenase (RefSeq. more...

Organism:: Halomonas bluephagenesis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL29233
3 Samples

Download data: XLS

Series

Accession:: GSE159233

ID:: 200159233

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Select item 2000696122.

Quantitative RNA-seq analysis unveils osmotic and thermal adaptation mechanisms relevant for ectoine production in Chromohalobacter salexigens

(Submitter supplied) Quantitative RNA sequencing (RNA-seq) and the complementary phenotypic assays were implemented to investigate the transcriptional responses of Chromohalobacter salexigens to osmotic and heat stress. These conditions trigger the synthesis of ectoine and hydroxyectoine, two compatible solutes of biotechnological interest. Our findings revealed that both stresses make a significant impact on C. salexigens global physiology. more...

Organism:: Chromohalobacter israelensis DSM 3043

Type:: Expression profiling by high throughput sequencing

Platform:: GPL20291
9 Samples

Download data: TXT

Series

Accession:: GSE69612

ID:: 200069612

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Select item 2001037733.

Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture

(Submitter supplied) Testing of response of hetertrophic partners (Halomonas sp. HL-48 and Marinobacter sp. HL-58) to both axenic and co-culture growth using both glucose and xylose

Organism:: Halomonas sp. HL48; Halomonas sp. HL58

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL24006 GPL24010 GPL24007
22 Samples

Download data: CSV

Series

Accession:: GSE103773

ID:: 200103773

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Select item 2000401334.

The Methylomes of Six Bacteria

(Submitter supplied) Six bacterial genomes, Geobacter metallireducens GS-15, Chromohalobacter salexigens, Vibrio breoganii 1C-10, Bacillus cereus ATCC 10987, Campylobacter jejuni subsp. jejuni 81-176 and Campylobacter jejuni NCTC 11168, all of which had previously been sequenced using other platforms were re-sequenced using single-molecule, real-time (SMRT) sequencing specifically to analyze their methylomes. In every case a number of new N6-methyladenine (m6A) and N4-methylcytosine (m4C) methylation patterns were discovered and the DNA methyltransferases (MTases) responsible for those methylation patterns were assigned. more...