txid322104[Organism] - GEO DataSets

Warning: The NCBI web site requires JavaScript to function. more...

Search results

Items: 17

Select item 2000285571.

Expression analysis of L-rhamnose catabolism in the yeast Scheffersomyces stipitis

(Submitter supplied) In Scheffersomyces stipitis and related fungal species the genes for L-rhamnose catabolism RHA1, LRA2, LRA3 and LRA4 but not LADH are clustered. We find that located next to the cluster is a transcription factor, TRC1, which is conserved among related species.Our transcriptome analysis shows that all the catabolic genes and all genes of the cluster are up-regulated on L-rhamnose. Among the genes that were also up-regulated on L-rhamnose were two transcription factors including the TRC1. more...

Organism:: Scheffersomyces stipitis CBS 6054

Type:: Expression profiling by array

Platform:: GPL13403
6 Samples

Download data: PAIR

Series

Accession:: GSE28557

ID:: 200028557

Select item 2000248582.

Expression analysis of various fungi grown in glucose or xylose

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Spathaspora passalidarum NRRL Y-27907; Candida albicans WO-1; Yamadazyma tenuis ATCC 10573; Scheffersomyces stipitis CBS 6054; Lodderomyces elongisporus NRRL YB-4239

Type:: Expression profiling by genome tiling array

5 related Platforms
30 Samples

Download data: FTR

Series

Accession:: GSE24858

ID:: 200024858

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000248543.

Expression analysis of Pichia stipitis CBS 6054 grown in glucose or xylose

(Submitter supplied) Investigation of whole genome gene expression level changes in Pichia stipitis CBS 6054 grown aerobically in xylose, compared to the same strain grown aerobically in glucose.

Organism:: Scheffersomyces stipitis CBS 6054

Type:: Expression profiling by genome tiling array

Platform:: GPL11080
6 Samples

Download data: FTR

Series

Accession:: GSE24854

ID:: 200024854

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000134034.

Scheffersomyces_stipitis_CBS 6054_385k_array

(Submitter supplied) NimbleGen design name 2007-01-31_TJ_Picst3 Nimblegen design id 5183. Array contains 13 60-mer probes for each open reading frame. Each probe was replicated five times on the chip. The design includes random GC and other control probes. The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files. more...

Organism:: Scheffersomyces stipitis CBS 6054

1 Series
6 Samples

Download data: NDF, NGD

Platform

Accession:: GPL13403

ID:: 100013403

PubMed Similar studies

Select item 1000110805.

Picha stipitis 385K tiled array

(Submitter supplied) NimbleGen design name: 090803 PS DW EXP; NimbleGen design ID: 23871. A tiled genome array from Pichia stipitis CBS 6054 with 374,100 probes (average probe length 53.6 +/- 4.1 nt, median spacing distance 33 nt). The design includes random GC and other control probes. Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.