GEO DataSets

(Submitter supplied) RNA-seq based transcriptome analysis was employed to understand the genome-wide expression patterns of B. glumae BGR1 under infected rice panicle tissue.

Organism:

Burkholderia glumae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27527

3 Samples

Download data: TXT

(Submitter supplied) Comparision of transcriptome between Burkholderia glumae wild type BGR1 and isocitrate lyase mutant BICL39

Organism:

Burkholderia glumae BGR1

Type:

Expression profiling by high throughput sequencing

Platform:

GPL20666

3 Samples

Download data: TXT

(Submitter supplied) We analyzed B. glumae transcriptome from infected rice tissue using an RNAseq technique. To identify unique expression of B. glumae genes within rice tissues, we compared in vivo transcriptome data of B. glumae to in vitro data. To accomplish this, we analyzed differentially expressed genes (DEGs) and identified 2,906 transcripts that were significantly altered.

Organism:

Burkholderia glumae BGR1

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18590

6 Samples

Download data: TXT

(Submitter supplied) Burkholderia glumae causes rice grain rot and sheath rot by producing toxoflavin, whose expression is regulated by quorum sensing (QS). The QS systems of the bacterium rely on N-octanoyl homoserine lactone, synthesized by TofI and its cognate receptor TofR, to activate toxoflavin biosynthesis genes and an IclR-type transcriptional regulator gene, qsmR. To understand genome-wide transcriptional profiling of QS signaling, we employed RNA-Seq of the wild type Burkholderia glumae BGR1 and two QS-defective mutants, BGS2 (BGR1 tofI::Ω) and BGS9 (BGR1 qsmR::Ω), with two different types of culture conditions including 6hr liquid culture (before onset QS) and 10hr liquid culture (after onset QS).

Organism:

Burkholderia glumae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL15346

6 Samples

Download data: TXT