GEO DataSets

(Submitter supplied) RNA extracted from representative isolates of each serovar grown to late exponential phase in Luria-Bertani broth showed that transcript abundances of core genes were significantly higher (p < 0.05) than those of accessory genes for all three serovars. Inter-serovar comparisons demonstrated higher transcript abundances for genes related to vitamin B12 biosynthesis, and ethanolamine and 1,2-propanediol utilization in S. more...

Organism:

Salmonella enterica subsp. enterica serovar Javiana; Salmonella enterica subsp. enterica serovar Cerro; Salmonella enterica subsp. enterica serovar Typhimurium

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL28563 GPL21220 GPL28564

9 Samples

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(Submitter supplied) Endogenous and exogenous chemical modifications in DNA have profound influences on genome function. We have developed a novel technology, Nick-seq, for mapping variety of DNA chemical modifications across the genomes at single-nucleotide resolution, by which we achieved quantitative profiling of single-strand breaks, phosphorothioate modifications, and oxidative DNA damage sites. This method is applicable for mapping of any DNA metabolism events that are involved in or can be converted, enzymatically or chemically, to DNA strand breaks such as DNA modifications, damages, genome replication, and chromatin structures.

Organism:

Salmonella enterica subsp. enterica serovar Cerro

Type:

Other

Platform:

GPL27579

4 Samples

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(Submitter supplied) To explore the molecular mechanism of the DNA phosphorothioate modification-dependent restriction system, the transcriptomes of Salmonella enterica serovar Cerro 87 wild-type and its modification or restriction genes deletion mutants were compared by microarray analysis.

Organism:

Salmonella enterica; Salmonella enterica subsp. enterica serovar Cerro

Type:

Expression profiling by array

Platform:

GPL18901

24 Samples

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(Submitter supplied) see manufacturer's web site at http://www.agilent.com/

Organism:

Salmonella enterica subsp. enterica serovar Cerro

1 Series

24 Samples

Download data: TXT