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Items: 13

1.

Small RNAs in monocots

(Submitter supplied) In monocots other than the cereals maize and rice, the repertoire and diversity of microRNAs (miRNAs) and the populations of phased, secondary, small interfering RNAs (phasiRNAs) are poorly characterized. To remedy this, we sequenced small RNAs (sRNAs) from vegetative and dissected inflorescence tissue in 28 phylogenetically diverse monocots and from several early-diverging angiosperm lineages, as well as publicly available data from 10 additional monocot species. more...
Organism:
Liriope muscari; Musa acuminata var. zebrina; Musa ABB Group; Musa acuminata AAA Group; Colocasia esculenta; Lemna gibba; Oryza glaberrima; Ananas comosus; Cocos nucifera; Phyllostachys edulis; Phoenix dactylifera; Hemerocallis lilioasphodelus; Pharus parvifolius; Tradescantia fluminensis; Goudaea ospinae; Acorus calamus; Setaria viridis; Canna indica; Anomochloa marantoidea; Kniphofia uvaria; Phalaenopsis equestris; Sagittaria montevidensis; Freycinetia cumingiana; Sorghum bicolor; Zea mays; Cyperus alternifolius; Zostera marina; Streptochaeta angustifolia; Elaeis guineensis; Nymphaea colorata; Echinodorus uruguayensis; Raddia brasiliensis; Prosthechea radiata
Type:
Non-coding RNA profiling by high throughput sequencing
34 related Platforms
195 Samples
Download data: TXT
Series
Accession:
GSE148762
ID:
200148762
2.

A Genome-Wide Identification of the miRNAome in Response to Salinity Stress in the Date palm tree (Phoenix dactylifera L.)

(Submitter supplied) Purpose: To identify conserved and novel miRNAs in date palm and, most importantly, to identify miRNAs that could play a role in salt tolerance Methods: we generated sRNA libraries from the leaves and roots of NaCl-treated and untreated seedlings of date palm,then Deep sequencing of these four sRNA libraries,last The bioinformatics analysis,further validated using semi-quantitative PCR (qPCR). Results: Deep sequencing of these four sRNA libraries yielded approximately 251 million reads. more...
Organism:
Phoenix dactylifera
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL20747
4 Samples
Download data: TXT
Series
Accession:
GSE71445
ID:
200071445
3.

Illumina NovaSeq 6000 (Phoenix dactylifera)

Organism:
Phoenix dactylifera
Download data
Platform
Accession:
GPL34212
ID:
100034212
4.

Illumina HiSeq 2500 (Phoenix dactylifera)

Organism:
Phoenix dactylifera
1 Series
4 Samples
Download data
Platform
Accession:
GPL28404
ID:
100028404
5.

Illumina HiSeq 2000 (Phoenix dactylifera)

Organism:
Phoenix dactylifera
1 Series
4 Samples
Download data
Platform
Accession:
GPL20747
ID:
100020747
6.

Datep_ma_bud_2

Organism:
Phoenix dactylifera
Source name:
sRNA Phoenix dactylifera, male buds
Platform:
GPL28404
Series:
GSE148762
Download data: TXT
Sample
Accession:
GSM4478468
ID:
304478468
7.

Datep_ma_bud_1

Organism:
Phoenix dactylifera
Source name:
sRNA Phoenix dactylifera, male buds
Platform:
GPL28404
Series:
GSE148762
Download data: TXT
Sample
Accession:
GSM4478467
ID:
304478467
8.

Datep_fe_bud_2

Organism:
Phoenix dactylifera
Source name:
sRNA Phoenix dactylifera, female buds
Platform:
GPL28404
Series:
GSE148762
Download data: TXT
Sample
Accession:
GSM4478466
ID:
304478466
9.

Datep_fe_bud_1

Organism:
Phoenix dactylifera
Source name:
sRNA Phoenix dactylifera, female buds
Platform:
GPL28404
Series:
GSE148762
Download data: TXT
Sample
Accession:
GSM4478465
ID:
304478465
10.

NaCl_root

Organism:
Phoenix dactylifera
Source name:
the root of NaCl-treated
Platform:
GPL20747
Series:
GSE71445
Download data: TXT
Sample
Accession:
GSM1834795
ID:
301834795
11.

NaCl_leaf

Organism:
Phoenix dactylifera
Source name:
the leaves of NaCl-treated
Platform:
GPL20747
Series:
GSE71445
Download data: TXT
Sample
Accession:
GSM1834794
ID:
301834794
12.

Control_root

Organism:
Phoenix dactylifera
Source name:
the root of untreated
Platform:
GPL20747
Series:
GSE71445
Download data: TXT
Sample
Accession:
GSM1834793
ID:
301834793
13.

Control_leaf

Organism:
Phoenix dactylifera
Source name:
the leaves of untreated
Platform:
GPL20747
Series:
GSE71445
Download data: TXT
Sample
Accession:
GSM1834792
ID:
301834792
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db=gds|term=txid42345[Organism]|query=1|qty=34|blobid=MCID_6752055dbaf2d2446b0e77bb|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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