txid44249[Organism] - GEO DataSets

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Select item 2001543031.

Inorganic phosphate solubilization by rhizosphere bacterium Paenibacillus sonchi genomovar Riograndensis SBR5: gene expression and physiological functions

(Submitter supplied) Due to the importance of phosphorus (P) in agriculture, crop inoculation with phosphate solubilizing bacteria (PSB) is a relevant subject of study. Paenibacillus sonchi genomovar Riograndensis SBR5 is a promising candidate for crop inoculation as it can fix nitrogen and excrete ammonium in a remarkably high rate. However, its trait of phosphate solubilization (PS) has not yet been studied in detail. more...

Organism:: Paenibacillus riograndensis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL23461
2 Samples

Download data: XLS, XLSX

Series

Accession:: GSE154303

ID:: 200154303

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000930622.

RNA-seq analyses of phase variation-dependent genes in Paenibacillus polymyxa E681

(Submitter supplied) Paenibacillus polymyxa is a root-associated plant growth-promoting rhizobacterium. It was reported that many strains of P. polymyxa naturally exhibited the phenotypic variation. In the phase variation, the characteristics of the wild-type ‘B’ and the variant ‘F’ are very different in sporulation formation, motility, antibiotic ability and so on. For better understanding of the actual physiological changes, we performed RNA-seq analyses of P. more...

Organism:: Paenibacillus polymyxa

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22875
2 Samples

Download data: TXT

Series

Accession:: GSE93062

ID:: 200093062

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000987663.

Detailed transcriptome analysis of the plant growth promoting Paenibacillus riograndensis SBR5 using RNAseq technology

(Submitter supplied) Background- The plant growth promoting rhizobacterium Paenibacillus riograndensis SBR5 is a promising candidate to serve as crop inoculant. Despite its potential regarding environmental and economic benefits, the species P. riograndensis is poorly characterized. Here, we performed for the first time a detailed transcriptome analysis of P. riograndensis SBR5 using RNAseq technology. Results- Sequence analysis of the library enriched in 5’-ends of the primary transcripts was used to identify 1,082 TSS belonging to novel transcripts and allowed us to determine a promoter consensus sequence and regulatory sequences in 5’ untranslated regions including riboswitches Conclusions- Our RNAseq analysis provides insight into the P. more...

Organism:: Paenibacillus riograndensis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL23461
2 Samples

Download data: XLS

Series

Accession:: GSE98766

ID:: 200098766

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000802674.

Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation

(Submitter supplied) It is well known that bacteria often exist in naturally formed multispecies biofilms. Within these biofilms, interspecies interactions seem to play an important role in ecological processes. Little is known about the effects of interspecies interactions on gene expression in these multispecies biofilms. This study presents a comparative gene expression analysis of the Xanthomonas retroflexus transcriptome when grown in a single-species biofilm and in dual- and four-species consortia with Stenotrophomonas rhizophila, Microbacterium oxydans and Paenibacillus amylolyticus. more...

Organism:: Paenibacillus amylolyticus; Microbacterium oxydans; Xanthomonas retroflexus; Stenotrophomonas rhizophila

Type:: Expression profiling by high throughput sequencing

5 related Platforms
17 Samples

Download data: FASTA, TXT

Series

Accession:: GSE80267

ID:: 200080267

SRA Run Selector

Select item 2000668165.

Transcriptome analysis reveals that sporulation is used as an iron deficiency resistance mechanism in Paenibacillus riograndensis SBR5

(Submitter supplied) Transcriptome analysis of Paenibacillus riograndensis SBR5.

Organism:: Paenibacillus riograndensis SBR5

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19945
4 Samples

Download data: TAB, TXT

Series

Accession:: GSE66816

ID:: 200066816

SRA Run Selector

Select item 2000374816.

The overall response of Paenibacillus larvae to bodily fluids of honeybee larvae (Apis mellifera).

(Submitter supplied) Paenibacillus larvae, the causal agent of American Foulbrood disease (AFB), affects honeybee health worldwide. The present study investigates the transcriptional response of this Gram-positive, endospore-forming bacterium to bodily fluids from honeybee larvae. Four different conditions were evaluated with a loop design: sampling of in vitro grown P. larvae cultures one or four hours after addition of larval fluids or BHIT-broth (C1, T1, C4, T4).

Organism:: Paenibacillus larvae

Type:: Expression profiling by array

Platform:: GPL15243
16 Samples

Download data: TXT

Series

Accession:: GSE37481

ID:: 200037481

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000352717.

The effect of kanamycin on Paenibacillus vortex

(Submitter supplied) Transcriptional profiling of the bacteria Paenibacillus vortex comparing control untreated cells with kanamycin treated cells after 18 hours of exposure. Goal was to determine the effect of the antibiotic kanamycin in concentration which affect the colony morphology on global bacteria gene expression.