txid568703[Organism] - GEO DataSets

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Select item 2001889291.

Ribosome profiling and RNA sequencing reveal genome-wide cellular translation and transcription regulation under osmotic stress in Lactobacillus rhamnosus ATCC 53103

(Submitter supplied) To determine whether osmotic pressure affects the translation efficiency of Lactobacillus rhamnosus, the ribosome profiling assay was performed to analyze the changes in translation efficiency in L. rhamnosus ATCC 53103. Under osmotic stress, differentially expressed genes (DEGs) involved in fatty acid biosynthesis and metabolism, ribosome, and purine metabolism pathways were co-regulated with consistent expression direction at translation and transcription levels. more...

Organism:: Lacticaseibacillus rhamnosus GG

Type:: Expression profiling by high throughput sequencing; Other

Platforms:: GPL30958 GPL30959
6 Samples

Download data: TXT

Series

Accession:: GSE188929

ID:: 200188929

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001073372.

RNA-seq analysis of Lactobacillus at acidic stress

(Submitter supplied) To understand transcriptional regulation of probiotic bacteria under acidic condition, RNAseq analysis was carried out over different growth conditions

Organism:: Lacticaseibacillus rhamnosus GG

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24302
9 Samples

Download data: CSV

Series

Accession:: GSE107337

ID:: 200107337

SRA Run Selector

Select item 2000410733.

Synbiotic impact of tagatose on viability of Lactobacillus rhamnosus strain GG mediated by the phosphotransferase system (PTS)

(Submitter supplied) The presence of tagatose in Lactobacillus rhamnosus strain GG caused induction of a large number of genes associated with carbohydrate metabolism including the phosphotransferase system. In addition, these results indicate the tagatose enhanced the growth of Lactobacillus casei 01 and Lactobacillus rhamnosus strain GG and their probiotic activities by activating tagatose-associated PTS networks.

Organism:: Lacticaseibacillus rhamnosus GG

Type:: Expression profiling by array

Platform:: GPL16093
1 Sample

Download data: TXT

Series

Accession:: GSE41073

ID:: 200041073

Analyze with GEO2R

Select item 2000289034.

Growth phase-associated changes in Lactobacillus rhamnosus GG

(Submitter supplied) Transcriptional profiling of probiotic Lactobacillus rhamnosus GG during growth in industrial-type whey medium in pH-controlled bioreactor cultures at two different growth pH: 4.8 and 5.8. Keywords: growth phase, growth pH

Organism:: Lacticaseibacillus rhamnosus GG

Type:: Expression profiling by array

Platform:: GPL10580
66 Samples

Download data: GPR

Series

Accession:: GSE28903

ID:: 200028903

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000225365.

Bile stress response in probiotic Lactobacillus rhamnosus GG

(Submitter supplied) Transcriptional profiling of probiotic Lactobacillus rhamnosus strain GG mid-exponential pH-controlled bioreactor cultures before and after exposure to bovine bile (0.2% ox gall). Keywords: bile, stress response