GenBank

##agp-version	2.0
# ORGANISM: Homo sapiens
# TAX_ID: 9606
# ASSEMBLY NAME: EG1
# ASSEMBLY DATE: 09-November-2011
# GENOME CENTER: NCBI
# DESCRIPTION: Example AGP specifying the assembly of chromosome Y from WGS contigs
chrY	1	10000	1	N	10000	telomere	no	na
chrY	10001	13043	2	W	AADB02037551.1	1	3043	+
chrY	13044	63043	3	N	50000	contig	no	na
chrY	63044	103491	4	W	AADB02037552.1	1	40448	+
chrY	103492	103704	5	N	213	scaffold	yes	paired-ends
chrY	103705	180685	6	W	AADB02037553.1	1	76981	+
chrY	180686	180761	7	N	76	scaffold	yes	paired-ends
chrY	180762	208430	8	W	AADB02037554.1	1	27669	+
chrY	208431	208528	9	N	98	scaffold	yes	paired-ends
chrY	208529	211480	10	W	AADB02037555.1	1	2952	+
chrY	211481	211603	11	N	123	scaffold	yes	paired-ends
chrY	211604	215752	12	W	AADB02037556.1	1	4149	-
chrY	215753	216117	13	N	365	scaffold	yes	paired-ends
chrY	216118	222025	14	W	AADB02037557.1	1	5908	+
chrY	222026	226376	15	N	4351	scaffold	yes	paired-ends
chrY	226377	235894	16	W	AADB02037558.1	1	9518	+
chrY	235895	235937	17	N	43	scaffold	yes	paired-ends
chrY	235938	276590	18	W	AADB02037559.1	1	40653	+
chrY	276591	276707	19	N	117	scaffold	yes	paired-ends
chrY	276708	289844	20	W	AADB02037560.1	1	13137	+
chrY	289845	290243	21	N	399	scaffold	yes	paired-ends
chrY	290244	293245	22	W	AADB02037561.1	1	3002	+
chrY	293246	293950	23	N	705	scaffold	yes	paired-ends
chrY	293951	295126	24	W	AADB02037562.1	1	1176	-
chrY	295127	295851	25	N	725	scaffold	yes	paired-ends
chrY	295852	297053	26	W	AADB02037563.1	1	1202	+
chrY	297054	297092	27	N	39	scaffold	yes	paired-ends
chrY	297093	298303	28	W	AADB02037564.1	1	1211	+
chrY	298304	311451	29	N	13148	scaffold	yes	paired-ends
chrY	311452	1722925	30	W	AADB02037565.1	1	1411474	+
chrY	1722926	1742444	31	N	19519	scaffold	yes	paired-ends
chrY	1742445	1746544	32	W	AADB02037566.1	1	4100	+
chrY	1746545	1746583	33	N	39	scaffold	yes	paired-ends
chrY	1746584	1751667	34	W	AADB02037567.1	1	5084	+
chrY	1751668	1754240	35	N	2573	scaffold	yes	paired-ends
chrY	1754241	1773890	36	W	AADB02037568.1	1	19650	+
chrY	1773891	1782885	37	N	8995	scaffold	yes	paired-ends
chrY	1782886	1862396	38	W	AADB02037569.1	1	79511	+
chrY	1862397	1862695	39	N	299	scaffold	yes	paired-ends
chrY	1862696	2396401	40	W	AADB02037570.1	1	533706	+
chrY	2396402	2396555	41	N	154	scaffold	yes	paired-ends
chrY	2396556	2600294	42	W	AADB02037571.1	1	203739	+
chrY	2600295	2624332	43	N	24038	scaffold	yes	paired-ends
chrY	2624333	2804216	44	W	AADB02037572.1	1	179884	+
chrY	2804217	2804392	45	N	176	scaffold	yes	paired-ends
chrY	2804393	2807384	46	W	AADB02037573.1	1	2992	+
chrY	2807385	2807704	47	N	320	scaffold	yes	paired-ends
chrY	2807705	2827258	48	W	AADB02037574.1	1	19554	+
chrY	2827259	2827492	49	N	234	scaffold	yes	paired-ends
chrY	2827493	2834410	50	W	AADB02037575.1	1	6918	+
chrY	2834411	2837254	51	N	2844	scaffold	yes	paired-ends
chrY	2837255	2983763	52	W	AADB02037576.1	1	146509	+
chrY	2983764	2983846	53	N	83	scaffold	yes	paired-ends
chrY	2983847	3313108	54	W	AADB02037577.1	1	329262	+
chrY	3313109	3313361	55	N	253	scaffold	yes	paired-ends
chrY	3313362	3355658	56	W	AADB02037578.1	1	42297	+
chrY	3355659	3355826	57	N	168	scaffold	yes	paired-ends
chrY	3355827	3362151	58	W	AADB02037579.1	1	6325	+
chrY	3362152	3363420	59	N	1269	scaffold	yes	paired-ends
chrY	3363421	3434094	60	W	AADB02037580.1	1	70674	+
chrY	3434095	3484094	61	N	50000	contig	no	na
chrY	3484095	3576421	62	W	AADB02037581.1	1	92327	+
chrY	3576422	3626421	63	N	50000	contig	no	na
chrY	3626422	3633571	64	W	AADB02037582.1	1	7150	+
chrY	3633572	3683571	65	N	50000	contig	no	na
chrY	3683572	3689149	66	W	AADB02037583.1	1	5578	+
chrY	3689150	3739149	67	N	50000	contig	no	na
chrY	3739150	3743739	68	W	AADB02037584.1	1	4590	+
chrY	3743740	3743930	69	N	191	scaffold	yes	paired-ends
chrY	3743931	3817095	70	W	AADB02037585.1	1	73165	+
chrY	3817096	3867095	71	N	50000	contig	no	na
chrY	3867096	4888632	72	W	AADB02037586.1	1	1021537	+
chrY	4888633	4895095	73	N	6463	scaffold	yes	paired-ends
chrY	4895096	5294822	74	W	AADB02037587.1	1	399727	+
chrY	5294823	5295013	75	N	191	scaffold	yes	paired-ends
chrY	5295014	5311092	76	W	AADB02037588.1	1	16079	+
chrY	5311093	5340667	77	N	29575	scaffold	yes	paired-ends
chrY	5340668	5345974	78	W	AADB02037589.1	1	5307	+
chrY	5345975	5353078	79	N	7104	scaffold	yes	paired-ends
chrY	5353079	5357497	80	W	AADB02037590.1	1	4419	+
chrY	5357498	5386397	81	N	28900	scaffold	yes	paired-ends
chrY	5386398	5390247	82	W	AADB02037591.1	1	3850	-
chrY	5390248	5390303	83	N	56	scaffold	yes	paired-ends
chrY	5390304	5409237	84	W	AADB02037592.1	1	18934	+
chrY	5409238	5409912	85	N	675	scaffold	yes	paired-ends
chrY	5409913	5415760	86	W	AADB02037593.1	1	5848	+
chrY	5415761	5442144	87	N	26384	scaffold	yes	paired-ends
chrY	5442145	5463517	88	W	AADB02037594.1	1	21373	+
chrY	5463518	5463826	89	N	309	scaffold	yes	paired-ends
chrY	5463827	5466918	90	W	AADB02037595.1	1	3092	+
chrY	5466919	5516918	91	N	50000	contig	no	na
chrY	5516919	5518843	92	W	AADB02037596.1	1	1925	-
chrY	5518844	5526430	93	N	7587	scaffold	yes	paired-ends
chrY	5526431	5802315	94	W	AADB02037597.1	1	275885	+
chrY	5802316	5802481	95	N	166	scaffold	yes	paired-ends
chrY	5802482	6589868	96	W	AADB02037598.1	1	787387	+
chrY	6589869	6590075	97	N	207	scaffold	yes	paired-ends
chrY	6590076	6945193	98	W	AADB02037599.1	1	355118	+
chrY	6945194	6995193	99	N	50000	contig	no	na
chrY	6995194	7000318	100	W	AADB02037600.1	1	5125	+
chrY	7000319	7008218	101	N	7900	scaffold	yes	paired-ends
chrY	7008219	7011252	102	W	AADB02037601.1	1	3034	+
chrY	7011253	7061252	103	N	50000	contig	no	na
chrY	7061253	7064002	104	W	AADB02037602.1	1	2750	+
chrY	7064003	8064002	105	N	1000000	centromere	no	na
chrY	8064003	8068271	106	W	AADB02037603.1	1	4269	+
chrY	8068272	8118271	107	N	50000	contig	no	na
chrY	8118272	8242041	108	W	AADB02037604.1	1	123770	+
chrY	8242042	8244184	109	N	2143	scaffold	yes	paired-ends
chrY	8244185	8792236	110	W	AADB02037605.1	1	548052	+
chrY	8792237	8792325	111	N	89	scaffold	yes	paired-ends
chrY	8792326	8823215	112	W	AADB02037606.1	1	30890	-
chrY	8823216	8823377	113	N	162	scaffold	yes	paired-ends
chrY	8823378	9246825	114	W	AADB02037607.1	1	423448	-
chrY	9246826	9296825	115	N	50000	contig	no	na
chrY	9296826	9369754	116	W	AADB02037608.1	1	72929	+
chrY	9369755	9373993	117	N	4239	scaffold	yes	paired-ends
chrY	9373994	9391895	118	W	AADB02037609.1	1	17902	+
chrY	9391896	9441895	119	N	50000	contig	no	na
chrY	9441896	9443411	120	W	AADB02037610.1	1	1516	+
chrY	9443412	9443832	121	N	421	scaffold	yes	paired-ends
chrY	9443833	9450054	122	W	AADB02037611.1	1	6222	-
chrY	9450055	9452607	123	N	2553	scaffold	yes	paired-ends
chrY	9452608	9455135	124	W	AADB02037612.1	1	2528	-
chrY	9455136	9455271	125	N	136	scaffold	yes	paired-ends
chrY	9455272	9457084	126	W	AADB02037613.1	1	1813	+
chrY	9457085	9457229	127	N	145	scaffold	yes	paired-ends
chrY	9457230	9458540	128	W	AADB02037614.1	1	1311	+
chrY	9458541	9458780	129	N	240	scaffold	yes	paired-ends
chrY	9458781	9460100	130	W	AADB02037615.1	1	1320	-
chrY	9460101	9460407	131	N	307	scaffold	yes	paired-ends
chrY	9460408	9464162	132	W	AADB02037616.1	1	3755	-
chrY	9464163	9474631	133	N	10469	scaffold	yes	paired-ends
chrY	9474632	9531181	134	W	AADB02037617.1	1	56550	-
chrY	9531182	9537521	135	N	6340	scaffold	yes	paired-ends
chrY	9537522	9542701	136	W	AADB02037618.1	1	5180	+
chrY	9542702	9592701	137	N	50000	contig	no	na
chrY	9592702	9972176	138	W	AADB02037619.1	1	379475	+
chrY	9972177	10022176	139	N	50000	contig	no	na
chrY	10022177	10225214	140	W	AADB02037620.1	1	203038	+
chrY	10225215	10229912	141	N	4698	scaffold	yes	paired-ends
chrY	10229913	10237887	142	W	AADB02037621.1	1	7975	-
chrY	10237888	10244895	143	N	7008	scaffold	yes	paired-ends
chrY	10244896	10247920	144	W	AADB02037622.1	1	3025	+
chrY	10247921	10248300	145	N	380	scaffold	yes	paired-ends
chrY	10248301	10251325	146	W	AADB02037623.1	1	3025	+
chrY	10251326	10255554	147	N	4229	scaffold	yes	paired-ends
chrY	10255555	10281345	148	W	AADB02037624.1	1	25791	+
chrY	10281346	10281492	149	N	147	scaffold	yes	paired-ends
chrY	10281493	10287592	150	W	AADB02037625.1	1	6100	+
chrY	10287593	10287755	151	N	163	scaffold	yes	paired-ends
chrY	10287756	10306727	152	W	AADB02037626.1	1	18972	+
chrY	10306728	10308466	153	N	1739	scaffold	yes	paired-ends
chrY	10308467	10312316	154	W	AADB02037627.1	1	3850	+
chrY	10312317	10313057	155	N	741	scaffold	yes	paired-ends
chrY	10313058	10345782	156	W	AADB02037628.1	1	32725	+
chrY	10345783	10348003	157	N	2221	scaffold	yes	paired-ends
chrY	10348004	10355024	158	W	AADB02037629.1	1	7021	+
chrY	10355025	10357938	159	N	2914	scaffold	yes	paired-ends
chrY	10357939	10365913	160	W	AADB02037630.1	1	7975	+
chrY	10365914	10390071	161	N	24158	scaffold	yes	paired-ends
chrY	10390072	10451539	162	W	AADB02037631.1	1	61468	+
chrY	10451540	10451892	163	N	353	scaffold	yes	paired-ends
chrY	10451893	10559704	164	W	AADB02037632.1	1	107812	+
chrY	10559705	10609704	165	N	50000	contig	no	na
chrY	10609705	10639297	166	W	AADB02037633.1	1	29593	+
chrY	10639298	10689297	167	N	50000	contig	no	na
chrY	10689298	10694354	168	W	AADB02037634.1	1	5057	+
chrY	10694355	10744354	169	N	50000	contig	no	na
chrY	10744355	11052129	170	W	AADB02037635.1	1	307775	+
chrY	11052130	11102129	171	N	50000	contig	no	na
chrY	11102130	11118152	172	W	AADB02037636.1	1	16023	+
chrY	11118153	11168152	173	N	50000	contig	no	na
chrY	11168153	11262822	174	W	AADB02037637.1	1	94670	+
chrY	11262823	11273941	175	N	11119	scaffold	yes	paired-ends
chrY	11273942	11308053	176	W	AADB02037638.1	1	34112	+
chrY	11308054	11309412	177	N	1359	scaffold	yes	paired-ends
chrY	11309413	11410209	178	W	AADB02037639.1	1	100797	+
chrY	11410210	11426596	179	N	16387	scaffold	yes	paired-ends
chrY	11426597	11430215	180	W	AADB02037640.1	1	3619	-
chrY	11430216	11430418	181	N	203	scaffold	yes	paired-ends
chrY	11430419	11433211	182	W	AADB02037641.1	1	2793	-
chrY	11433212	11440292	183	N	7081	scaffold	yes	paired-ends
chrY	11440293	11510653	184	W	AADB02037642.1	1	70361	+
chrY	11510654	11511949	185	N	1296	scaffold	yes	paired-ends
chrY	11511950	11824572	186	W	AADB02037643.1	1	312623	+
chrY	11824573	11874572	187	N	50000	contig	no	na
chrY	11874573	11878623	188	W	AADB02037644.1	1	4051	+
chrY	11878624	11928623	189	N	50000	contig	no	na
chrY	11928624	11933053	190	W	AADB02037645.1	1	4430	+
chrY	11933054	11943053	191	N	10000	telomere	no	na