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arhgap20b Rho GTPase activating protein 20b [ Danio rerio (zebrafish) ]

Gene ID: 100002649, updated on 4-Jan-2025

Summary

Official Symbol
arhgap20bprovided by ZNC
Official Full Name
Rho GTPase activating protein 20bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060526-383
See related
AllianceGenome:ZFIN:ZDB-GENE-060526-383
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:rp71-5c20.2
Summary
Orthologous to human ARHGAP20 (Rho GTPase activating protein 20). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See arhgap20b in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (22263912..22335005)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (21759664..21825020)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene ferredoxin 1b Neighboring gene uncharacterized LOC137495581 Neighboring gene microRNA 223 Neighboring gene G protein-coupled receptor 83 Neighboring gene butyrophilin-like protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
rho GTPase-activating protein 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    22263912..22335005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005165210.5XP_005165267.1  rho GTPase-activating protein 20 isoform X4

    UniProtKB/TrEMBL
    A0A8M2BCJ1
    Conserved Domains (4) summary
    cd04402
    Location:328520
    RhoGAP_ARHGAP20; RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by ...
    pfam00169
    Location:80159
    PH; PH domain
    cl00155
    Location:184247
    UBQ; Ubiquitin-like proteins
    cl17171
    Location:65158
    PH-like; Pleckstrin homology-like domain
  2. XM_003198623.6XP_003198671.2  rho GTPase-activating protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A8M1REZ7
    Conserved Domains (4) summary
    cd04402
    Location:328520
    RhoGAP_ARHGAP20; RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by ...
    pfam00169
    Location:80159
    PH; PH domain
    cl00155
    Location:184247
    UBQ; Ubiquitin-like proteins
    cl17171
    Location:65158
    PH-like; Pleckstrin homology-like domain
  3. XM_068221430.1XP_068077531.1  rho GTPase-activating protein 20 isoform X2

  4. XM_068221431.1XP_068077532.1  rho GTPase-activating protein 20 isoform X3

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394572.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    239014..310290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021471580.2XP_021327255.1  rho GTPase-activating protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A8M9Q1I1
    Conserved Domains (3) summary
    cd04402
    Location:328520
    RhoGAP_ARHGAP20; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces ...
    cl17171
    Location:65158
    PH-like; Pleckstrin homology-like domain
    cl25424
    Location:184247
    TGS; The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information ...
  2. XM_068218219.1XP_068074320.1  rho GTPase-activating protein 20 isoform X2

  3. XM_068218218.1XP_068074319.1  rho GTPase-activating protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A8M9Q1I1
  4. XM_068218220.1XP_068074321.1  rho GTPase-activating protein 20 isoform X3