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si:ch211-237a4.2 si:ch211-237a4.2 [ Danio rerio (zebrafish) ]

Gene ID: 100034537, updated on 4-Jan-2025

Summary

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Official Symbol
si:ch211-237a4.2provided by ZNC
Official Full Name
si:ch211-237a4.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-504
See related
AllianceGenome:ZFIN:ZDB-GENE-060503-504
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Human ortholog(s) of this gene implicated in CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and urticaria. Orthologous to several human genes including NLRP12 (NLR family pyrin domain containing 12); NLRP13 (NLR family pyrin domain containing 13); and NLRP14 (NLR family pyrin domain containing 14). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See si:ch211-237a4.2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (56508018..56558648)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137491458 Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene uncharacterized LOC101886012 Neighboring gene si:ch211-227p7.1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007115.7 Chromosome 4 Reference GRCz11 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
NLR family CARD domain-containing protein 3; uncharacterized protein LOC100034537

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    56508018..56558648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017355684.3 → XP_017211173.2  NLR family CARD domain-containing protein 3

    UniProtKB/TrEMBL
    A0A8M6Z6G2
Nucleotide Protein
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