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Prr35 proline rich 35 [ Mus musculus (house mouse) ]

Gene ID: 100034748, updated on 4-Jan-2025

Summary

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Official Symbol
Prr35provided by MGI
Official Full Name
proline rich 35provided by MGI
Primary source
MGI:MGI:2442713
See related
Ensembl:ENSMUSG00000025727 AllianceGenome:MGI:2442713
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A93001711Rik; A930017K11Rik
Summary
Is expressed in brain; male reproductive gland or organ; and metanephros. Orthologous to human PRR35 (proline rich 35). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in cerebellum adult (RPKM 3.8), kidney adult (RPKM 3.2) and 6 other tissues See more
Orthologs
human all
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Genomic context

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See Prr35 in Genome Data Viewer
Location:
17 A3.3; 17 13.03 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (26165353..26171539, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (25946379..25952573, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene Rab40C, member RAS oncogene family Neighboring gene cytochrome c oxidase subunit 7C, pseudogene 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:26056925-26057108 Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class Q Neighboring gene RIKEN cDNA gene D630044L22 gene Neighboring gene NHL repeat containing 4 Neighboring gene calpain 15 Neighboring gene RIKEN cDNA 1700022N22 gene Neighboring gene RAB11 family interacting protein 3 (class II)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
proline-rich protein 35

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358019.1 → NP_001344948.1  proline-rich protein 35

    Status: VALIDATED

    Source sequence(s)
    AK044505, AW124301
    Consensus CDS
    CCDS89026.1
    UniProtKB/TrEMBL
    E0CXQ2
    Related
    ENSMUSP00000125106.2, ENSMUST00000162431.2
    Conserved Domains (2) summary
    PHA03247
    Location:94 → 539
    PHA03247; large tegument protein UL36; Provisional
    pfam15269
    Location:17 → 70
    zf-C2H2_7; Zinc-finger

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    26165353..26171539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030249393.2 → XP_030105253.1  proline-rich protein 35 isoform X1

    UniProtKB/TrEMBL
    E0CXQ2
    Conserved Domains (2) summary
    PHA03247
    Location:94 → 539
    PHA03247; large tegument protein UL36; Provisional
    pfam15269
    Location:17 → 70
    zf-C2H2_7; Zinc-finger

  2. XM_030249394.2 → XP_030105254.1  proline-rich protein 35 isoform X1

    UniProtKB/TrEMBL
    E0CXQ2
    Conserved Domains (2) summary
    PHA03247
    Location:94 → 539
    PHA03247; large tegument protein UL36; Provisional
    pfam15269
    Location:17 → 70
    zf-C2H2_7; Zinc-finger
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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