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Cldn34c6 claudin 34C6 [ Mus musculus (house mouse) ]

Gene ID: 100039763, updated on 4-Jan-2025

Summary

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Official Symbol
Cldn34c6provided by MGI
Official Full Name
claudin 34C6provided by MGI
Primary source
MGI:MGI:3809203
See related
Ensembl:ENSMUSG00000118415 AllianceGenome:MGI:3809203
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm2411
Summary
Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be active in bicellular tight junction and plasma membrane. Orthologous to human CLDN34 (claudin 34). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in testis adult (RPKM 9.0), whole brain E14.5 (RPKM 2.6) and 14 other tissues See more
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Genomic context

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See Cldn34c6 in Genome Data Viewer
Location:
X E3; X 49.81 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (122256469..122288415)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (123346785..123378718)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_47881 Neighboring gene serine-rich, secreted, X-linked Neighboring gene ribosomal protein S12, pseudogene 22 Neighboring gene STARR-seq mESC enhancer starr_47882 Neighboring gene ribosomal protein S12, pseudogene 22 Neighboring gene claudin 34C2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in biological_process ND
No biological Data available
more info
  
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in bicellular tight junction IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein Cldn34c6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    122256469..122288415
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528420.3 → XP_006528483.1  uncharacterized protein Cldn34c6 isoform X1

    UniProtKB/TrEMBL
    Q9CXT3

  2. XM_011247719.2 → XP_011246021.1  uncharacterized protein Cldn34c6 isoform X2

    See identical proteins and their annotated locations for XP_011246021.1

    UniProtKB/TrEMBL
    A0A571BDF8, Q9CXT3
    Related
    ENSMUSP00000158706.3, ENSMUST00000238410.3

  3. XM_006528421.4 → XP_006528484.1  uncharacterized protein Cldn34c6 isoform X2

    See identical proteins and their annotated locations for XP_006528484.1

    UniProtKB/TrEMBL
    A0A571BDF8, Q9CXT3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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