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Smim38 small integral membrane protein 38 [ Mus musculus (house mouse) ]

Gene ID: 100040049, updated on 4-Jan-2025

Summary

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Official Symbol
Smim38provided by MGI
Official Full Name
small integral membrane protein 38provided by MGI
Primary source
MGI:MGI:1916283
See related
Ensembl:ENSMUSG00000109305 AllianceGenome:MGI:1916283
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm2572; 1810010D01Rik
Summary
Orthologous to human SMIM38 (small integral membrane protein 38). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Restricted expression toward stomach adult (RPKM 767.5) See more
Orthologs
human all
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Genomic context

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See Smim38 in Genome Data Viewer
Location:
7 F5; 7 88.99 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (144759560..144761856, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (145205823..145208119, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46023 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:152297325-152297512 Neighboring gene STARR-seq mESC enhancer starr_20563 Neighboring gene STARR-seq mESC enhancer starr_20566 Neighboring gene predicted gene 45181 Neighboring gene STARR-seq mESC enhancer starr_20567 Neighboring gene VISTA enhancer mm1497 Neighboring gene two pore segment channel 2 Neighboring gene STARR-seq mESC enhancer starr_20570 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:152429156-152429339 Neighboring gene STARR-positive B cell enhancer ABC_E3765 Neighboring gene STARR-seq mESC enhancer starr_20571 Neighboring gene MAS-related GPR, member F Neighboring gene MAS-related GPR, member D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
small integral membrane protein 38

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001369202.1 → NP_001356131.1  small integral membrane protein 38

    Status: VALIDATED

    Source sequence(s)
    AC151715
    Consensus CDS
    CCDS90363.1
    UniProtKB/TrEMBL
    A0A1L1SR87
    Related
    ENSMUSP00000149353.2, ENSMUST00000208788.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    144759560..144761856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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